View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_low_40 (Length: 238)
Name: NF11123_low_40
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 28529278 - 28529502
Alignment:
| Q |
1 |
aaccaagtatagttttgtccatgtcttgaatgtttacagttccaaaatgcactttatggagatgccaagggttttgggagagattttttctctttctgct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28529278 |
aaccaagtatagttttgtccatgtcttgaatgtttacagttccaaaatgcactttatggagatgccaagggttttgggagagattttttctctttctgct |
28529377 |
T |
|
| Q |
101 |
cttcatgtgttcctggagttataaaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggcaatttttgtggatcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28529378 |
cttcatgtgttcctggagttataaaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggcaatttttgtggatcc |
28529477 |
T |
|
| Q |
201 |
attatttttattcttaatatatgtg |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
28529478 |
attatttttattcttaatatatgtg |
28529502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 28056051 - 28056245
Alignment:
| Q |
20 |
catgtcttgaatgtttacagttccaaaatgcactttatggagatgccaagggttttgggagagattttttctctttctgctcttcatgtgttcctggagt |
119 |
Q |
| |
|
||||| || |||||||||||||||| ||| | ||| |||| || |||| |||||||| ||| | |||| |||||||||||||||||| |||||||||| |
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|
| T |
28056051 |
catgttttaaatgtttacagttccacaattctcttcatggcgacaccaaaggttttggaagaaaacttttttctttctgctcttcatgtattcctggagt |
28056150 |
T |
|
| Q |
120 |
tataaaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggcaatttttgtggatccattatttttattct |
214 |
Q |
| |
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||| ||||||||||| ||| | || | |||||||||||| || ||||||| ||||||||| | |||||||||| ||||| |||||||| |||| |
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| T |
28056151 |
tatgaaccctcacacgaaagtcgtactacaatggaacaaggttttggccatattttgcatggtcacaatttttgttgatccgttatttttcttct |
28056245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 225
Target Start/End: Original strand, 28086704 - 28086896
Alignment:
| Q |
33 |
tttacagttccaaaatgcactttatggagatgccaagggttttgggagagattttttctctttctgctcttcatgtgttcctggagttataaaccctcac |
132 |
Q |
| |
|
|||||||||||| ||| | || ||||| || ||||| |||| ||| || | ||||| ||||||||| ||||||| ||||||||||||| |||||||| |
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|
| T |
28086704 |
tttacagttccacaattctctatatggcgacgccaaaggttatggaaggaaatttttttctttctgcaattcatgtattcctggagttatgaaccctcat |
28086803 |
T |
|
| Q |
133 |
actaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggcaatttttgtggatccattatttttattcttaatatatgtg |
225 |
Q |
| |
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| ||| |||| |||||||||||||| || ||||||| |||||| || | ||||||||||| ||||| |||||||| |||||| | |||||| |
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|
| T |
28086804 |
gcaaaagttgtacaacaatggaacaaggttttggccatattttgcttggtcgcaatttttgttgatccgttattttttttcttactctatgtg |
28086896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 27927144 - 27926937
Alignment:
| Q |
20 |
catgtcttgaatgtttacagttccaaaatgcactttatggagatgccaagggttttgggagagattttttctctttctgctcttcatgtgttcctggagt |
119 |
Q |
| |
|
||||| ||||||||||||||||||| ||| | |||||||| | ||||| |||| ||| ||| | |||| ||||||||||||||||| |||||| ||| |
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|
| T |
27927144 |
catgttttgaatgtttacagttccacaattctctttatggcgtcgccaaaggttatggaagaaaacttttttctttctgctcttcatggattcctgaagt |
27927045 |
T |
|
| Q |
120 |
tata-aaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggcaatttttgtggatccattatttttattcttaat |
218 |
Q |
| |
|
||| || ||||| | ||| |||| |||||||||||||| || ||||||| |||||| || | ||||||||| | |||||||||||||| |||||| | |
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|
| T |
27927044 |
tatggaatcctcaagcgaaagttgtacaacaatggaacaaggttttggccatattttgcttggtcgcaatttttattgatccattatttttcttcttact |
27926945 |
T |
|
| Q |
219 |
atatgtga |
226 |
Q |
| |
|
||||||| |
|
|
| T |
27926944 |
ctatgtga |
27926937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 28026272 - 28026479
Alignment:
| Q |
20 |
catgtcttgaatg-tttacagttccaaaatgcactttatggagatgccaagggttttgggagagattttttctctttctgctcttcatgtgttcctggag |
118 |
Q |
| |
|
||||| ||||||| |||||||||||| ||| | |||||||| || |||| |||| ||| ||| | |||| |||||||| ||||| ||| ||||||| | |
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|
| T |
28026272 |
catgttttgaatgatttacagttccacaattctctttatggtgacaccaaaggttatggaagaaaacttttttctttctgttcttcgtgtattcctggtg |
28026371 |
T |
|
| Q |
119 |
ttataaaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggcaatttttgtggatccattatttttattcttaat |
218 |
Q |
| |
|
|||| ||||| || | ||| |||| |||||||||||||| ||| ||||||| |||||||| | ||||||| ||| ||||| |||||||| |||||| | |
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|
| T |
28026372 |
ttatgaacccccatgcgaaagttgtacaacaatggaacaagtttttggccatattttgcatagtcgcaatttatgttgatccgttatttttcttcttatt |
28026471 |
T |
|
| Q |
219 |
atatgtga |
226 |
Q |
| |
|
||||||| |
|
|
| T |
28026472 |
ctatgtga |
28026479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 27892944 - 27893043
Alignment:
| Q |
116 |
gagttataaaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggcaatttttgtggatccattatttttattctt |
215 |
Q |
| |
|
|||||||||| || || | ||||||||| || |||||||| |||||| | || |||| |||| || |||||||||||||||||||||||||||| ||||| |
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|
| T |
27892944 |
gagttataaatccacataataaacttgtacatcaatggaataaattttttgcaatttgttgcttggtggcaatttttgtggatccattatttttcttctt |
27893043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 214
Target Start/End: Original strand, 28012035 - 28012213
Alignment:
| Q |
36 |
acagttccaaaatgcactttatggagatgccaagggttttgggagagattttttctctttctgctcttcatgtgttcctggagttataaaccctcacact |
135 |
Q |
| |
|
|||||||| |||| | || |||||||| ||||| |||||||| ||| | |||| |||| ||||||||||||| ||||| |||||| ||||| || | |
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|
| T |
28012035 |
acagttccgaaattctctgtatggagacgccaaaggttttggaagaaaacttttttcttcctgctcttcatgtattcctaaagttatgaaccccgactgt |
28012134 |
T |
|
| Q |
136 |
aaacttgttcaacaatggaacaaatttctggccattttttgcatgctggcaatttttgtggatccattatttttattct |
214 |
Q |
| |
|
||| |||| || ||||||||| ||| ||||||| ||||| | | ||||||||||||||||| ||||||||||||| |
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|
| T |
28012135 |
aaagttgtacacttatggaacaagtttttggccataatttgctttgttgcaatttttgtggatcccttatttttattct |
28012213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 226
Target Start/End: Original strand, 27906749 - 27906884
Alignment:
| Q |
91 |
tctttctgctcttcatgtgttcctggagttataaaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggcaattt |
190 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| ||||| ||| | | | || | |||||||||||||| || ||| ||| |||||| || | |||||| |
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|
| T |
27906749 |
tctttctgctcttcatgtattccaggagttatgaacccacacgcgagaattatacaacaatggaacaagttgttggacatattttgcttggtcgcaattc |
27906848 |
T |
|
| Q |
191 |
ttgtggatccattatttttattcttaatatatgtga |
226 |
Q |
| |
|
|||| ||||| |||||||| |||||| | ||||||| |
|
|
| T |
27906849 |
ttgttgatcctttatttttgttcttattctatgtga |
27906884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 27995806 - 27995877
Alignment:
| Q |
86 |
ttttctctttctgctcttcatgtgttcctggagttataaaccctcacactaaacttgttcaacaatggaaca |
157 |
Q |
| |
|
|||| ||||| |||||||||||| ||||| ||||||| ||||||||| |||| | || ||||||||||||| |
|
|
| T |
27995806 |
ttttatctttttgctcttcatgtattcctagagttatgaaccctcactgtaaagtcgtacaacaatggaaca |
27995877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 1435358 - 1435563
Alignment:
| Q |
20 |
catgtcttgaatgtttacagttccaaaatgcactttatggagatgccaagggttttgggagagattttttctctttctgctcttcatgtgttcctggagt |
119 |
Q |
| |
|
||||| ||||||||||||||||||| ||| | |||||||| || ||||| |||| ||| || | ||| |||||||||||||||||| |||||||||| |
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|
| T |
1435358 |
catgttttgaatgtttacagttccacaattctctttatggcgacgccaaaggttatggacgaaaagtttattctttctgctcttcatgtattcctggagt |
1435457 |
T |
|
| Q |
120 |
tataaaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggcaatttttgtggatccattatttttattcttaata |
219 |
Q |
| |
|
|| ||||||||||| ||| |||| || ||||||||||| ||| ||||||| |||||| |||| ||||||||||| ||||| |||||||| |||||| | |
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|
| T |
1435458 |
gatgaaccctcacacaaaaattgtacagcaatggaacaagtttttggccatattttgcctgctcgcaatttttgttgatcccttatttttcttcttactt |
1435557 |
T |
|
| Q |
220 |
tatgtg |
225 |
Q |
| |
|
|||||| |
|
|
| T |
1435558 |
tatgtg |
1435563 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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