View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_low_42 (Length: 227)
Name: NF11123_low_42
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10069161 - 10069384
Alignment:
| Q |
1 |
aggtagtggatgaatattaagtgtatgtctatgtgactttatatagttgcaatagaggatgaaaataaaataaagcaaatttttgggattatttaatttc |
100 |
Q |
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| T |
10069161 |
aggtagtggatgaatattaagtgtatgtctatgcgactttatatagttgcaatagaggatgaaaataaaataaagcaaatttttgggattatttaatttt |
10069260 |
T |
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| Q |
101 |
tgatggccagcctgcctcaacttattgttttcgaggatttcaaggatgatgacaattgtcttgttgatgagagaggaaataagttttggtggtttcattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10069261 |
tgatggccagcctgcctcaacttattgttttcgaggatttcaaggatgatgacaattgtcttgttgatgagagaggaaataagttttggtggtttcattc |
10069360 |
T |
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| Q |
201 |
ttcttgtttttgagacgattaact |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
10069361 |
ttcttgtttttgagacgattaact |
10069384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10106922 - 10106970
Alignment:
| Q |
1 |
aggtagtggatgaatattaagtgtatgtctatgtgactttatatagttg |
49 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10106922 |
aggtagtggatgaatattaagtgtatgtctatgtgactttatatagttg |
10106970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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