View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_low_45 (Length: 219)
Name: NF11123_low_45
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 2391861 - 2392065
Alignment:
| Q |
1 |
gtggcaagggtttgatttttgtaaactttacccaaaaggaattgtagaggggattctcgtcttgcctttgatatatagtaaacgtcatagttaacacact |
100 |
Q |
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| T |
2391861 |
gtggcaagggtttgatttttgtaaactttactcaaaaggaattgtagaggggattctcgtcttgcctttgatatatagtaaacgtcatagttaacacact |
2391960 |
T |
|
| Q |
101 |
tgtacaaaatgccgagtaatgag--agnnnnnnnatttgcccatttgcttctgattctgataaattgtaatatttttcaactattcagagttactatggt |
198 |
Q |
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||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391961 |
tgtacaaaatgccgagtaatgagaaagtttttttatttgtccatttgcttctgattctgataaattgtaatatttttcaactattcagagttactatggt |
2392060 |
T |
|
| Q |
199 |
caaac |
203 |
Q |
| |
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||||| |
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|
| T |
2392061 |
caaac |
2392065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 56189392 - 56189190
Alignment:
| Q |
9 |
ggtttgatttttgtaaactttacccaaaaggaattgtagaggggattctcgtcttgcctttgatatatagtaaacgtcatagttaacacacttgtacaaa |
108 |
Q |
| |
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||||||||||||||| ||||||| |||| |||||||||||| ||||||| | ||||||||||| ||||| ||||||||||||| | ||||||| ||| |
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| T |
56189392 |
ggtttgatttttgtatactttacacaaa-ggaattgtagagtggattcttggtttgcctttgatgtatag--cacgtcatagttaagatacttgtaaaaa |
56189296 |
T |
|
| Q |
109 |
atgccgagtaatgaga---gnnnnnnnatttgcccatttgcttctgattctgata------aattgtaatatttttcaa--ctattcagagttactatgg |
197 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||| |||| |||||||| |||| ||||||||||| ||||||| |
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| T |
56189295 |
atgctaagtaatgagaaagttgtttttatttgcccatttgcttctgattctgataatttataattttaatatttctcaaagctattcagagtaactatgg |
56189196 |
T |
|
| Q |
198 |
tcaaac |
203 |
Q |
| |
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|||||| |
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|
| T |
56189195 |
tcaaac |
56189190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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