View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11123_low_5 (Length: 431)
Name: NF11123_low_5
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Original strand, 54430751 - 54431154
Alignment:
| Q |
20 |
ttacccaccattcatttagagttatactcctataaggaatatatttgtcttttaatcgtttttataaatttctctctacttatttttctattcatccaaa |
119 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54430751 |
ttactcaccattcatttagagttatactcctataaggaatatatttgtcttttaatcgtttttataaatttctctctacttatttttctattcatccaaa |
54430850 |
T |
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| Q |
120 |
caatacaaactaatggaattcactttaattagcacttctcactaatggagttcatcaatcttctaattgtgtctatctctctcataaatgaacaataatc |
219 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54430851 |
caatacaaactaaaggaattcactttaattagcacttctcactaatggagttcatcaatcttctaattgtgtctatctctctcataaatgaacaatagtc |
54430950 |
T |
|
| Q |
220 |
tagatgtggggtaaatgaatggaatctcaactcaagaaacacacaattgattatcttgaacttgttactaaacaaatgttaatccactagtccatatttg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54430951 |
tagatgtggggtaaatgaatggaatctcaactcaagaaacacacaattgattatcttgaacttgttactaaacaaatgttaatccactagtccatatttg |
54431050 |
T |
|
| Q |
320 |
ctccatttagtcctgttcacttcatatatgcaaaacattgaggacaatccatatacacttcttctcaaaaaatggaggacaatccatatacacttattct |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54431051 |
ctccatttagtcctgttcacttcatatatgcaaaacattgaggacaatccatatacacttcttctcaaaaaatggaggacaatccatatacacttattct |
54431150 |
T |
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| Q |
420 |
tctc |
423 |
Q |
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|||| |
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| T |
54431151 |
tctc |
54431154 |
T |
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