View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11123_low_6 (Length: 430)

Name: NF11123_low_6
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11123_low_6
NF11123_low_6
[»] chr2 (11 HSPs)
chr2 (16-415)||(17282430-17282831)
chr2 (20-322)||(1552083-1552382)
chr2 (19-307)||(3920936-3921221)
chr2 (19-323)||(1894737-1895032)
chr2 (65-315)||(17374635-17374885)
chr2 (68-315)||(4868949-4869198)
chr2 (65-315)||(11163591-11163836)
chr2 (126-323)||(34659578-34659784)
chr2 (254-320)||(30799263-30799329)
chr2 (336-379)||(31415490-31415533)
chr2 (260-312)||(34661783-34661835)
[»] chr5 (16 HSPs)
chr5 (19-323)||(21600508-21600813)
chr5 (19-307)||(6989168-6989453)
chr5 (101-320)||(38959176-38959391)
chr5 (53-251)||(41356041-41356238)
chr5 (29-323)||(18696317-18696616)
chr5 (19-169)||(1157715-1157864)
chr5 (68-322)||(7269967-7270224)
chr5 (65-323)||(27170662-27170923)
chr5 (68-315)||(6030877-6031126)
chr5 (65-322)||(1377540-1377799)
chr5 (68-322)||(26656040-26656299)
chr5 (68-322)||(26927627-26927886)
chr5 (65-171)||(7767579-7767685)
chr5 (215-322)||(1157879-1157987)
chr5 (19-107)||(38958636-38958723)
chr5 (248-323)||(41356932-41357007)
[»] chr1 (12 HSPs)
chr1 (19-323)||(25790950-25791251)
chr1 (68-323)||(615052-615310)
chr1 (65-293)||(39709551-39709783)
chr1 (29-116)||(34117577-34117664)
chr1 (84-315)||(11408355-11408588)
chr1 (132-315)||(27340197-27340382)
chr1 (101-323)||(34653202-34653427)
chr1 (190-323)||(34117411-34117544)
chr1 (93-307)||(6504324-6504540)
chr1 (65-110)||(34654463-34654508)
chr1 (271-315)||(15123855-15123899)
chr1 (271-315)||(15148043-15148087)
[»] chr4 (12 HSPs)
chr4 (20-315)||(53201586-53201878)
chr4 (19-315)||(47518946-47519237)
chr4 (19-322)||(31360557-31360858)
chr4 (19-206)||(34227488-34227674)
chr4 (65-323)||(14566531-14566798)
chr4 (65-287)||(23054823-23055046)
chr4 (231-315)||(34227681-34227765)
chr4 (231-314)||(24958272-24958355)
chr4 (84-216)||(6409420-6409554)
chr4 (231-314)||(50626521-50626603)
chr4 (29-69)||(6409594-6409634)
chr4 (271-315)||(52721866-52721910)
[»] chr7 (9 HSPs)
chr7 (19-315)||(11698838-11699131)
chr7 (68-321)||(3301738-3301996)
chr7 (66-315)||(29549916-29550166)
chr7 (65-321)||(1777892-1778151)
chr7 (102-262)||(39020786-39020947)
chr7 (251-319)||(3959112-3959180)
chr7 (65-99)||(39020736-39020770)
chr7 (29-69)||(1778159-1778199)
chr7 (271-315)||(47718833-47718877)
[»] chr6 (9 HSPs)
chr6 (46-296)||(20739948-20740196)
chr6 (142-322)||(1869249-1869427)
chr6 (65-293)||(34213936-34214166)
chr6 (65-179)||(3524106-3524222)
chr6 (65-315)||(21880758-21880988)
chr6 (232-319)||(34503405-34503491)
chr6 (261-315)||(32018598-32018652)
chr6 (271-315)||(13032350-13032394)
chr6 (29-69)||(21880996-21881036)
[»] chr3 (9 HSPs)
chr3 (65-323)||(43275262-43275521)
chr3 (69-315)||(18270266-18270512)
chr3 (65-322)||(893491-893762)
chr3 (83-322)||(3364057-3364298)
chr3 (68-112)||(3576867-3576911)
chr3 (271-315)||(20585550-20585594)
chr3 (227-314)||(27741827-27741914)
chr3 (252-315)||(50735378-50735441)
chr3 (252-315)||(50777414-50777477)
[»] chr8 (7 HSPs)
chr8 (65-322)||(20860611-20860867)
chr8 (65-322)||(10408138-10408396)
chr8 (112-321)||(5993937-5994148)
chr8 (84-315)||(6443330-6443560)
chr8 (65-95)||(5994151-5994181)
chr8 (29-69)||(5994189-5994229)
chr8 (29-69)||(6443596-6443636)
[»] scaffold0005 (1 HSPs)
scaffold0005 (65-323)||(250577-250844)
[»] scaffold0009 (1 HSPs)
scaffold0009 (105-292)||(53805-53993)
[»] scaffold0341 (1 HSPs)
scaffold0341 (93-307)||(6007-6223)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 17282430 - 17282831
Alignment:
Q  16 tgtggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgttt 115  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17282430 tgtggtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttattttggtgttt 17282528  T
Q  116 ctatttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggag 215  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |    
T  17282529 ctatttattgatttcggagatagccctttgttaggaggcgtttcctataggtttttggatttttctttattttcacgggtgtatgagttttacattgg-g 17282627  T
Q  216 ggcttcccatcatcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| |||||||    
T  17282628 ggcttcccatcatcctttgtttgttgctaccgtaagactcctagcctagcactctttgtgctggttaagattaattgttatcttaataaattccatttta 17282727  T
Q  316 cctttttc----nnnnnnnnnnnntcaattcacttaaactcaattattatcaaagtagaatcaaacatgtacgtgtgagacgactaacatgtcacatttg 411  Q
    | ||||||                |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||     
T  17282728 cttttttcaaaaaaaaaaaaaaaatcaattcacttaaactcaattattatcaaagtagaaccaaacatgtacgtgtgagacgactaacatatcacattta 17282827  T
Q  412 aact 415  Q
    ||||    
T  17282828 aact 17282831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 1552083 - 1552382
Alignment:
Q  20 gtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctat 119  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||    
T  1552083 gtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgttttgttgatcgtggtgttagctatgttttggtgtttctat 1552181  T
Q  120 ttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggct 219  Q
    ||||| ||||| ||||||||||||||||||||| |||||| ||||| |||||| ||||||||||||||||| ||||||||||||||| |||||| | |||    
T  1552182 ttattgatttcggagatagccctttgttaggaggcgtttcttatagatttttgaatttttctttattttcatgggtgtatgggtttt-cattgg-gagct 1552279  T
Q  220 tcccatcatcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcattttacctt 319  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||||||  ||||||| |||||||||||||||||||||||||||||  |||||| |||    
T  1552280 tcccaccatcctttgtttgttgctactgtaagactcttagcctagcactccttgtgctcgttaagattcattgctatcttaataaattctattttaactt 1552379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 3921221 - 3920936
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||    
T  3921221 ggtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctatgttttgatgtttcta 3921123  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggc 218  Q
    |||||| ||||| ||||||||||||||||||||| |||||  ||||| |||||| |||||||||||||||||| |||||||||||||| |||||| |||     
T  3921122 tttattgatttcggagatagccctttgttaggaggcgtttattatagatttttgaatttttctttattttcacaggtgtatgggtttt-cattgg-gggt 3921025  T
Q  219 ttcccatcatcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatt 307  Q
    || |||||||| |||||||||||||||||||||||||||| | |||||||  |||||||||||| || |||||||||||||||||||||    
T  3921024 tttccatcatcatttgtttgttgctactgtaagactcctaacttagcactccttgtgctggttatgactcattgctatcttaataaatt 3920936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 1895032 - 1894737
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgttt-atgttgtttcgttgatcgtggtgttagatttgttttggtgtttct 117  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||| |||||||    
T  1895032 ggtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggatttttttttatgttgtttcgttgaacgtggtgttagctttgttttgatgtttct 1894934  T
Q  118 atttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggaggg 217  Q
    ||||||| |||||  ||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||            
T  1894933 atttattgatttcgaagatagctctttgttaggagacgttttctataagtttttggatttttctttattttcacgggtgtatggattctcca-------- 1894842  T
Q  218 cttcccatcatcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcattttacc 317  Q
     ||||||||||| ||||||||||||||| ||||||||||||||||| ||||  ||||||||||||| |||||||||||||||||||||||  |||||| |    
T  1894841 -ttcccatcatcctttgtttgttgctaccgtaagactcctagcctaacactccttgtgctggttaaaattcattgctatcttaataaattctattttagc 1894743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 65 - 315
Target Start/End: Complemental strand, 17374885 - 17374635
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| ||||| ||||||||||| | ||||||| |||||||||||    
T  17374885 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttgatttttctatttattgatttcggagatagccctctcttaggaggcgtttcctata 17374786  T
Q  165 ggt-ttttggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcct 262  Q
    ||| ||||||||||||  ||   |||||||||||||| ||||| |||| | ||||| |||||| ||| ||||| | ||||| || ||||||||||||| |    
T  17374785 ggttttttggattttttctttgattcacgggtgtatgagtttttcattag-gggctccccatctatcctttgtatattgct-ctttaagactcctagctt 17374688  T
Q  263 agcactttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    | ||||  ||||||||||||||||||||||  || ||||||||||||||||||    
T  17374687 aacactccttgtgctggttaagattcattgtgattttaataaatttcatttta 17374635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 68 - 315
Target Start/End: Complemental strand, 4869198 - 4868949
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggt 167  Q
    |||||||||||||||||||||||   |||||| || ||||||||||||||||| ||| ||||||||||| |||||||| |||||| ||||||||||||||    
T  4869198 tgtttatgttgtttcgttgatcgccctgttagcttggttttggtgtttctattaattgatttcagagatggccctttgctaggaggcgtttcctataggt 4869099  T
Q  168 tttt---ggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagccta 263  Q
    ||||   | ||||||||||   ||||| |||||| || ||||| ||||| ||||| ||| || ||| ||||| |||||||||| ||||||||||||||||    
T  4869098 ttttttggaatttttcttt-gattcacaggtgtaaggattttcaattgg-gggctccccgtctatcctttgtatgttgctactttaagactcctagccta 4869001  T
Q  264 gcactttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    |||||  |||||||| |||||||||||| | || ||||||||||||||||||    
T  4869000 gcactccttgtgctgattaagattcatttcgattttaataaatttcatttta 4868949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 65 - 315
Target Start/End: Original strand, 11163591 - 11163836
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||| ||||||||   |||||||| ||||||||||| |||||||||||| ||||  || ||||||||||||||||||  |||| |||||    
T  11163591 ttttgtttatgttgtgtcgttgat---ggtgttagctttgttttggtatttctatttattgattttggatatagccctttgttaggaggtgttttctata 11163687  T
Q  165 ggtttttggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagccta 263  Q
     ||||||   ||||| ||| | |||||||||||||| ||||| |||||||   |||| |||| ||| ||| | |||| ||||| ||||||||||| ||||    
T  11163688 agttttt-tttttttttttttattcacgggtgtatgagtttttcattgga--tcttctcatctatcctttatatgttactactttaagactcctaaccta 11163784  T
Q  264 gcactttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    |||||   ||| ||||||||||||||| || || |||||||||| |||||||    
T  11163785 gcactccctgtactggttaagattcatcgcgatgttaataaattccatttta 11163836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 126 - 323
Target Start/End: Complemental strand, 34659784 - 34659578
Alignment:
Q  126 atttcagagatagccctttgttaggagacgtttcctataggttttt-ggatttttct-ttattttcacgggtgtatg----ggttttccattggagggct 219  Q
    ||||||||| ||| ||||||||||||| ||||||||||| |||||| |||||||| | ||   ||||||||||||||    ||||||| ||||| | |||    
T  34659784 atttcagagttagtcctttgttaggaggcgtttcctatatgttttttggatttttttcttcgattcacgggtgtatgtatgggttttctattgg-gagct 34659686  T
Q  220 tcccatc-atcttttgtttgttgctactgtaagactcctagcctagca---ctttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
     | |||| ||| ||||| |||||||||| ||||||||||| |||||||   ||  | ||||||||||||||||||||| || ||||||||||||||||||    
T  34659685 cctcatctatcctttgtatgttgctactttaagactcctaacctagcagcactcctcgtgctggttaagattcattgcgattttaataaatttcatttta 34659586  T
Q  316 cctttttc 323  Q
     |||||||    
T  34659585 gctttttc 34659578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 30799329 - 30799263
Alignment:
Q  254 tcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcattttaccttt 320  Q
    |||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||| ||||    
T  30799329 tcctagcctaacacttcttgtgctggttaagattcattgcgattttaataaatttcattttaacttt 30799263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 379
Target Start/End: Original strand, 31415490 - 31415533
Alignment:
Q  336 tcaattcacttaaactcaattattatcaaagtagaatcaaacat 379  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||    
T  31415490 tcaattcacttaaaatcaattattgtcaaagtagaaccaaacat 31415533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 34661835 - 34661783
Alignment:
Q  260 cctagcactttttgtgctggttaagattcattgctatcttaataaatttcatt 312  Q
    |||||||| |||||||||||| |||| ||||||  || |||||||||||||||    
T  34661835 cctagcaccttttgtgctggtcaagactcattgtgattttaataaatttcatt 34661783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 21600813 - 21600508
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  21600813 ggtggtaga-agttgtttttgtggcagttgtgacgatgtttgaggattttgtttatgttgtttcgttgttcgtgatgttagctttgttttggtgtttcta 21600715  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggc 218  Q
    |||||| ||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21600714 tttattgattccagatatagtcctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattgg-gggc 21600616  T
Q  219 ttcccatcatcttttgtttgttgctactgtaaga--ctcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcatttta- 315  Q
    ||||||||||| ||||||||||||||| ||||||  ||| ||||||| ||||  |||| |||||||||||||||||||||||||||||||| |||||||     
T  21600615 ttcccatcatcatttgtttgttgctacggtaagactctcatagcctaacactccttgtactggttaagattcattgctatcttaataaattccattttag 21600516  T
Q  316 cctttttc 323  Q
    ||||||||    
T  21600515 cctttttc 21600508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 6989453 - 6989168
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  6989453 ggtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgtttttgtgtttcta 6989355  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggc 218  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |||||| || |    
T  6989354 tttattgatttcggagatagccctttgttaggagacgtttcctataggtttttgga-ttttctttattttcacaggtgtatgagtttttcattgg-ggac 6989257  T
Q  219 ttcccatcatcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatt 307  Q
    ||||||||||| |||||||||||||||||||||||  ||| |||||||||  || || |||||||||||||||||||||||||||||||    
T  6989256 ttcccatcatcctttgtttgttgctactgtaagacctctaacctagcactccttatgttggttaagattcattgctatcttaataaatt 6989168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 101 - 320
Target Start/End: Original strand, 38959176 - 38959391
Alignment:
Q  101 tttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatg 200  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |||    
T  38959176 tttgttttggtgtttctatttattgatt-cggagatagccctttgttaggaggcgtttcctataggtttttcgatttttctttattt-cacgggtgcatg 38959273  T
Q  201 ggttttccattggagggcttcccatcatcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatctta 300  Q
    ||||||||| |||  || ||  ||||||  ||||||||||||||||||||||||| ||||||||||||  ||||||| ||||||||||||||||||||||    
T  38959274 ggttttccaatgg--ggtttttcatcatactttgtttgttgctactgtaagactcttagcctagcactccttgtgctagttaagattcattgctatctta 38959371  T
Q  301 ataaatttcattttaccttt 320  Q
    ||||||| ||||||| ||||    
T  38959372 ataaattccattttagcttt 38959391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 53 - 251
Target Start/End: Original strand, 41356041 - 41356238
Alignment:
Q  53 gatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggag 152  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||  ||||||| |||||||||||||    
T  41356041 gatgcttggggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttagtgtttctatttattgattttggagatagtcctttgttaggag 41356140  T
Q  153 acgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatcatcttttgtttgttgctactgtaag 251  Q
      ||| |||||||||||||||||||||||||||||||| |||| |||| |||||||||||| ||| || |  ||||| |||||||||||||||||||||    
T  41356141 gtgttacctataggtttttggatttttctttattttcatgggtttatgtgttttccattgg-gggttttctctcatcctttgtttgttgctactgtaag 41356238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 29 - 323
Target Start/End: Complemental strand, 18696616 - 18696317
Alignment:
Q  29 agttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatt 128  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| |||    
T  18696616 agttgttattgtggcagttgcgacgatgcttgaggattttgtttatgttgtttctttgatcatggtgttagctttgttttggtgtttctatttattgatt 18696517  T
Q  129 tcagagatagccc---tttgttaggagacgtttcctataggtttttggatttttctttatt--ttcacgggtgtatgggttttccattggagggcttccc 223  Q
    || ||||||||||   ||| ||||||| |||||| ||||| |||||| |||||| ||  ||  || | || | |||| |||||||||| || || |||||    
T  18696516 tcggagatagccctcatttattaggaggcgtttcttatagttttttgaattttttttctttgatttatggttatatgagttttccattaga-ggtttccc 18696418  T
Q  224 atc-atcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcattttaccttttt 322  Q
    ||| ||| ||||  |||||||| ||||| |||||||||||| | ||  |||||| |||||||||||||||| || |||||||||||||||||| ||||||    
T  18696417 atctatcgtttgcatgttgctattgtaaaactcctagcctaactctcgttgtgccggttaagattcattgccattttaataaatttcattttagcttttt 18696318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 1157715 - 1157864
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1157715 ggtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttcta 1157813  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggttt 169  Q
    |||||| ||||| ||||||||| ||||||||||| |||||| |||||||||    
T  1157814 tttattgatttcggagatagccatttgttaggaggcgtttcttataggttt 1157864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 68 - 322
Target Start/End: Complemental strand, 7270224 - 7269967
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggt 167  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||| ||||||||| |||||||||||||||   ||||||||||||||    
T  7270224 tgtttatgttgtttcgttgatcgtgctgttagcttggttttggtgtttctattaattgatttcagagttagccctttgttaggttgcgtttcctataggt 7270125  T
Q  168 --ttttggatttttct-ttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagccta 263  Q
      |||||||||||| | ||   ||||||||||||||  ||||||||||| || || || ||| ||| ||||| |||||||||| ||||||||||||||||    
T  7270124 ttttttggatttttttcttcgattcacgggtgtatgaattttccattgg-ggactccctatctatcctttgtatgttgctactttaagactcctagccta 7270026  T
Q  264 gcactttttgtgctggttaagattcattgctatcttaataaatttcattttaccttttt 322  Q
    ||| |  ||||||||||||||||||||||| || ||||||||||| |||||| ||||||    
T  7270025 gcattccttgtgctggttaagattcattgcgattttaataaattttattttagcttttt 7269967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 65 - 323
Target Start/End: Original strand, 27170662 - 27170923
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| ||||||||||| |||||||||||    
T  27170662 ttttgtttatgttgtttcattgatcgtggtgttagctttgttttggtgtttctatttattggtttcggagatagccatttgttaggaggcgtttcctata 27170761  T
Q  165 ggttttt-ggatttttctttattttcacggg----tgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactccta 258  Q
    ||||||| ||||||||  ||   |||  |||    ||||||||||||||||| ||||||| |||||| ||| ||||| |||||||| | |||||||||||    
T  27170762 ggtttttcggattttttctttgattcttgggtgtatgtatgggttttccatt-gagggctccccatctatcctttgtatgttgcta-tttaagactccta 27170859  T
Q  259 gcctagcactttttgtgctggttaagattcattgctatcttaataaatttcattttacctttttc 323  Q
    ||||| ||||  ||||||||||||||||||||||| || |||||||| ||||||||| |||||||    
T  27170860 gcctatcactccttgtgctggttaagattcattgcgattttaataaa-ttcattttaactttttc 27170923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 68 - 315
Target Start/End: Original strand, 6030877 - 6031126
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctat-agg 166  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||| |||||||| |||||| |||||||||| ||     
T  6030877 tgtttatgttgtttcgttgatcgtgctgttagattggttttggtgtttctattaattgatttcagagatggccctttgctaggaggcgtttcctataagt 6030976  T
Q  167 tttttggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctac-tgtaagactcctagcctag 264  Q
    |||||||||||||  ||   ||||||||||||||||||||||||||| | ||| ||| || ||| ||||| |||| |||| | |||||||  |||||||     
T  6030977 tttttggattttttatttgattcacgggtgtatgggttttccattgg-gagctccccgtctatcctttgtatgttactacttttaagacttatagcctaa 6031075  T
Q  265 cactttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    |||| |||||||||||||||||||||| | || ||||||||||||||||||    
T  6031076 cactctttgtgctggttaagattcatttcgattttaataaatttcatttta 6031126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 65 - 322
Target Start/End: Complemental strand, 1377799 - 1377540
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgttt--ccta 162  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||  ||||||||||||| |||||  ||||    
T  1377799 ttttgattatgttgtttcgttgatcgtggtgttagttttgttttggtgtttctatttattaatttcggagataatcctttgttaggaggcgtttttccta 1377700  T
Q  163 taggtttttggatttttctttatt-ttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagc 260  Q
    ||| ||||||||||||| | | |  |||| |||||||||||| |||||||  ||| || |||||| ||| ||||| ||||| |||| ||||||||||| |    
T  1377699 tagttttttggatttttttctttgattcatgggtgtatgggtcttccatt--aggactccccatctatcatttgtatgttgttactttaagactcctaac 1377602  T
Q  261 ctagcactttttgtgctggttaagattcattgctatcttaataaatttcattttaccttttt 322  Q
    ||| || |  ||||||||||||||||| ||||| || | |||||||||||||||| ||||||    
T  1377601 ctaacattccttgtgctggttaagattaattgcgatttgaataaatttcattttaacttttt 1377540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 68 - 322
Target Start/End: Complemental strand, 26656299 - 26656040
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggt 167  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||| ||||| ||| ||| ||||||||||||| ||||||||||||||    
T  26656299 tgtttatgttgtttcgttgatcgtgttgttagtttggttttggtgtttctattaattgatttcggagttagtcctttgttaggaggcgtttcctataggt 26656200  T
Q  168 ttt-tggatttttct-ttattttcacgggtgtatgggttttcc---attggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcc 261  Q
    ||| ||||||||| | ||   |||||||||||||| |||||||   ||| | ||||| |||||| ||| ||||| | ||| |||| ||||||||||||||    
T  26656199 tttatggatttttttcttcgattcacgggtgtatgagttttccaatattag-gggctccccatctatcctttgtatattgatactttaagactcctagcc 26656101  T
Q  262 tagcactttttgtgctggttaagattcattgctatcttaataaatttcattttaccttttt 322  Q
    ||||| |  ||||||||||||||||||||||| || |||||||||| ||||||||||||||    
T  26656100 tagcattgcttgtgctggttaagattcattgcgattttaataaattccattttaccttttt 26656040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 68 - 322
Target Start/End: Complemental strand, 26927886 - 26927627
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggt 167  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||| ||||| ||| ||| ||||||||||||| ||||||||||||||    
T  26927886 tgtttatgttgtttcgttgatcgtgttgttagtttggttttggtgtttctattaattgatttcggagttagtcctttgttaggaggcgtttcctataggt 26927787  T
Q  168 ttt-tggatttttct-ttattttcacgggtgtatgggttttcc---attggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcc 261  Q
    ||| ||||||||| | ||   |||||||||||||| |||||||   ||| | ||||| |||||| ||| ||||| | ||| |||| ||||||||||||||    
T  26927786 tttatggatttttttcttcgattcacgggtgtatgagttttccaatattag-gggctccccatctatcctttgtatattgatactttaagactcctagcc 26927688  T
Q  262 tagcactttttgtgctggttaagattcattgctatcttaataaatttcattttaccttttt 322  Q
    ||||| |  ||||||||||||||||||||||| || |||||||||| ||||||||||||||    
T  26927687 tagcattgcttgtgctggttaagattcattgcgattttaataaattccattttaccttttt 26927627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 7767579 - 7767685
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| ||||  |||||| |||||||||||||| |||||||||||    
T  7767579 ttttgtttatgttgttccgttgatcgtggtgttagctttgttttggtgtttatatttattgattttggagataaccctttgttaggaggcgtttcctata 7767678  T
Q  165 ggttttt 171  Q
    |||||||    
T  7767679 ggttttt 7767685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 322
Target Start/End: Original strand, 1157879 - 1157987
Alignment:
Q  215 gggcttcccatcatcttttgtttgttgctactgtaagactcctagcctag-cactttttgtgctggttaagattcattgctatcttaataaatttcattt 313  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||| |||||    
T  1157879 gggcttcccatcatcctttatttgttgctactgtaagactcctagcctagacactgcttgtgctggttaagatttattgctatcttaataaattccattt 1157978  T
Q  314 taccttttt 322  Q
    || ||||||    
T  1157979 taacttttt 1157987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 38958636 - 38958723
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttt 107  Q
    ||||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||    
T  38958636 ggtggtaga-agttgtttttgtgtcagtagtgacgatgcttgaggattttgtttatgttgtttcgttgatcatgttgttagctttgttt 38958723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 41356932 - 41357007
Alignment:
Q  248 taagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcattttacctttttc 323  Q
    |||||||||||||||||||||  | |||||| ||||||||||||| |||||||||||||||||||||| |||||||    
T  41356932 taagactcctagcctagcactcctcgtgctgattaagattcattgttatcttaataaatttcattttagctttttc 41357007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 25791251 - 25790950
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  25791251 ggtggtaga-agttgtttttgtgacagttgtgacgatgcttgaggattttgtttatgttgtttcattgatcgtggtgttagctttgttttgatgtttcta 25791153  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggc 218  Q
    |||||| ||||| ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  25791152 tttattgatttcggagatagccctatgttaggagacatatcctataggtttttggatttttctttattttcacgggtgtatgggttttccatt-gagggt 25791054  T
Q  219 ttcccatcatcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcattttacct 318  Q
    || |||||||| |||||||||||| ||| ||||||||||| ||| |||||  ||||||||||||||| | |||| |||||||||||||||||||||| ||    
T  25791053 tttccatcatcatttgtttgttgcaact-taagactcctaacctggcactccttgtgctggttaagaattattgttatcttaataaatttcattttagct 25790955  T
Q  319 ttttc 323  Q
    |||||    
T  25790954 ttttc 25790950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 68 - 323
Target Start/End: Complemental strand, 615310 - 615052
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggt 167  Q
    |||||||||||||| |||||||||| |||||| || ||||||||||||||||| ||| |||||||| ||| ||||||| |||||| | |||||||||| |    
T  615310 tgtttatgttgttttgttgatcgtgctgttagcttggttttggtgtttctattaattgatttcagatataaccctttgctaggaggcatttcctatagtt 615211  T
Q  168 tttt---ggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagccta 263  Q
    ||||   ||||||||  ||   ||||||||||||||| ||||||||||| ||||| |||||| ||| ||||| |||||||||| ||||||||||||| ||    
T  615210 tttttttggattttttctttgattcacgggtgtatggattttccattgg-gggctccccatctatcctttgtatgttgctactttaagactcctagcata 615112  T
Q  264 gcactttttgtgctggttaagattcattgctatcttaataaatttcattttacctttttc 323  Q
    |||||| ||||||| ||||||||||||| | || |||||||||| ||||||| |||||||    
T  615111 gcacttcttgtgctagttaagattcatttcgattttaataaattccattttaactttttc 615052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 65 - 293
Target Start/End: Original strand, 39709551 - 39709783
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||| || | |||||||||||||  |||||| | ||    
T  39709551 ttttgtttttgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattggtttcagggacaaccctttgttaggaagcgtttctttta 39709650  T
Q  165 gg-tttttggatttttctttatt--ttcacgggtgtatgggttttccattggagggcttc-ccatc-atcttttgtttgttgctactgtaagactcctag 259  Q
    || ||||||||||||| ||  ||  ||||||||| |||| |||||||||| | ||||| | ||||| ||||||||| |||||||||| ||||||||| ||    
T  39709651 ggttttttggattttttttctttgattcacgggtatatgagttttccatttg-gggctcctccatctatcttttgtatgttgctactttaagactccaag 39709749  T
Q  260 cctagcactttttgtgctggttaagattcattgc 293  Q
    |||||||||  ||| |   |||||||||||||||    
T  39709750 cctagcactccttgcgtcagttaagattcattgc 39709783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 34117664 - 34117577
Alignment:
Q  29 agttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttc 116  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34117664 agttgtttttgtggcagttgcaacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttc 34117577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 84 - 315
Target Start/End: Original strand, 11408355 - 11408588
Alignment:
Q  84 ttgatcgtggtgttagatttgtttt-ggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggttttt-ggatttt-tc 180  Q
    ||||| |||||||||| |||||||| ||||||||  |||||| ||||| |||||||| |||||||||| |  |||| |||||  ||||| ||||||| ||    
T  11408355 ttgattgtggtgttagctttgtttttggtgtttccttttattgatttcggagatagctctttgttaggtggtgttttctataaattttttggattttgtc 11408454  T
Q  181 tttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctgg 279  Q
    |||  |  |||||||||||| ||||| |||||| ||||| ||| || ||| ||||| |||| ||||| |||||||| || |||||||||  |||||||||    
T  11408455 tttgatg-cacgggtgtatgagtttttcattgg-gggctccccgtctatcctttgtatgttactactttaagactcataacctagcactccttgtgctgg 11408552  T
Q  280 ttaagattcattgctatcttaataaatttcatttta 315  Q
    ||| |||||||||| || |||||||||| |||||||    
T  11408553 ttatgattcattgcaattttaataaattccatttta 11408588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 315
Target Start/End: Original strand, 27340197 - 27340382
Alignment:
Q  132 gagatagccctttgttaggagacgtttcctataggtttttggatttttctttatt--ttcacgggtgtatgggttttccattggagggcttcccatc-at 228  Q
    |||||||| |||| |||| ||||||||  ||||||||||| |  |||||||  ||  | |||| ||||||| ||||||||||| ||| ||||||||| ||    
T  27340197 gagatagctcttttttagaagacgttttttataggttttttggattttcttatttgatgcacgagtgtatgagttttccattgaagg-cttcccatctat 27340295  T
Q  229 cttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    | ||| | |||||||||| |||||||| ||| |||||||| ||||||| ||||| |||||||||| || ||||||||||||||||||    
T  27340296 cctttttatgttgctactttaagactcgtagtctagcactctttgtgccggttaggattcattgccattttaataaatttcatttta 27340382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 323
Target Start/End: Complemental strand, 34653427 - 34653202
Alignment:
Q  101 tttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggttttt-ggatttttctttatt--ttcacgggtgt 197  Q
    |||||||||||||||| | | ||| ||||| || ||| ||||||||||||||  ||||||||||| ||||| |||||||| ||  ||  |||||||||||    
T  34653427 tttgttttggtgtttccactcattgatttcggatataaccctttgttaggaggtgtttcctatagtttttttggattttttttctttgattcacgggtgt 34653328  T
Q  198 atgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctat 296  Q
    ||| ||||| ||||| ||| || | |||| ||| |||||||||| ||| | ||||||| | ||| |||||||  |||| || ||||||||||||||| ||    
T  34653327 atgagtttttcattg-aggactcctcatctatcctttgtttgttactattttaagacttcaagcgtagcactccttgtactcgttaagattcattgcgat 34653229  T
Q  297 cttaataaatttcattttacctttttc 323  Q
     |||||||||| ||||||| |||||||    
T  34653228 tttaataaattccattttaactttttc 34653202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 190 - 323
Target Start/End: Complemental strand, 34117544 - 34117411
Alignment:
Q  190 acgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattc 288  Q
    |||| ||||||||| |||||||| ||||||||||||| ||| ||||| |||||||| |||||||||| |||| |||||||  |||||||||||||||||     
T  34117544 acggttgtatgggtcttccattg-agggcttcccatctatcctttgtatgttgctattgtaagactcttagcttagcactccttgtgctggttaagatta 34117446  T
Q  289 attgctatcttaataaatttcattttacctttttc 323  Q
    ||||   | |||||||||||||||||| |||||||    
T  34117445 attgtggttttaataaatttcattttagctttttc 34117411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 307
Target Start/End: Original strand, 6504324 - 6504540
Alignment:
Q  93 gtgttagatttgtttt-ggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggttttt-ggatttt-tctttattttc 189  Q
    ||||||| |||||||| |||||||   |||||| |||||  ||||| |||||||||||||   ||||| |||| |||||| ||||||| |||||  |  |    
T  6504324 gtgttagctttgtttttggtgttttcttttattgatttcgaagataaccctttgttaggatgtgtttcttataagttttttggattttgtctttgatg-c 6504422  T
Q  190 acgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattc 288  Q
    |||| ||||||||||||||||||| ||||| |||||| ||| ||| | |||||||||  |||||||| ||||||| ||||  ||||||| ||||  ||||    
T  6504423 acggatgtatgggttttccattgg-gggctccccatctatcctttatatgttgctacattaagactcatagcctaacactccttgtgctagttagaattc 6504521  T
Q  289 attgctatcttaataaatt 307  Q
    ||||  || ||||||||||    
T  6504522 attgtgattttaataaatt 6504540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 34654508 - 34654463
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttgg 110  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||    
T  34654508 ttttgtttatgttgtttcgttgatcgtgatgttagctttgttttgg 34654463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 15123855 - 15123899
Alignment:
Q  271 ttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    |||||||||||| |||||||||  || ||||||||||||||||||    
T  15123855 ttgtgctggttaggattcattgggattttaataaatttcatttta 15123899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 15148043 - 15148087
Alignment:
Q  271 ttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    |||||||||||| |||||||||  || ||||||||||||||||||    
T  15148043 ttgtgctggttaggattcattgggattttaataaatttcatttta 15148087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 53201878 - 53201586
Alignment:
Q  20 gtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctat 119  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||    
T  53201878 gtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgttttgttgatcgtgatgttagctttgttttggtgtttctat 53201780  T
Q  120 ttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggct 219  Q
    ||||| ||||| |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||  ||| |    
T  53201779 ttattgatttcggagatagccctttgttaggaggtgtttcctataggtttttggatttttatttattttcacgggtgtatggattttccattg--ggggt 53201682  T
Q  220 tcccatcatcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    | |||||||| ||||||| ||| ||||||||||||||||||||| || |  |||||| |||||||||| |||||||| |||| ||||| |||||||    
T  53201681 ttccatcatcctttgtttattgttactgtaagactcctagcctaacattccttgtgccggttaagattaattgctatattaacaaattccatttta 53201586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 47518946 - 47519237
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| |||||||||| |||||||||||| |||||| ||||||   ||||||||| ||||||||| |||||||||||||||| |    
T  47518946 ggtggtaga-agttgtttttgtggcagttgtggcgatgcttgaggtttttgtatatgtt---tcgttgatcctggtgttagctttgttttggtgtttcga 47519041  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggc 218  Q
    |||||| ||||| ||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||    
T  47519042 tttattgatttcggagatagccctttgttaggaggcatttccaataggtttttggatttttctttattctcgtgggtgtatgggttttccattgg-gggc 47519140  T
Q  219 ttcccatcatcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    ||||||||||| |||||||||||||| |||||||||| || |||| ||||  ||||||||||||||||| |||| |||||||||||||| |||||||    
T  47519141 ttcccatcatcctttgtttgttgctagtgtaagactcttaacctaacactccttgtgctggttaagatttattgttatcttaataaattccatttta 47519237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 31360557 - 31360858
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| || | ||||||||||| |||| ||||||||||||||||| |||||||||||| |||||| |||||||| |||||||||    
T  31360557 ggtggtaga-agttgtttttgtggtaattgtgacgatgtttgaagattttgtttatgttgtgtcgttgatcgtgatgttagttttgttttagtgtttcta 31360655  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggc 218  Q
    |||||| ||||  || |||||  |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||    
T  31360656 tttattgattttggaaatagcattttgttaggagacgttttttataggtttttggatttttctatattttcacgggtgtatgggtttttcattgg-gggc 31360754  T
Q  219 ttcccatcatcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcattttacct 318  Q
    ||||||||||| ||||| |||||||||| ||||||| || ||||| ||||  ||||||||| ||||||||| || |||||||||||||||||||||| ||    
T  31360755 ttcccatcatcatttgtgtgttgctactataagacttctggcctaacactccttgtgctggctaagattcagtgttatcttaataaatttcattttagct 31360854  T
Q  319 tttt 322  Q
    ||||    
T  31360855 tttt 31360858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 34227488 - 34227674
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34227488 ggtggtaga-agttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttcta 34227586  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggtttt 206  Q
    |||||| ||||| ||||||||||||||||| |||  | ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34227587 tttattgatttcggagatagccctttgttaagaggtgattcctataggtttttggatttttctttattttcacgggtgtatggatttt 34227674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 65 - 323
Target Start/End: Original strand, 14566531 - 14566798
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||    
T  14566531 ttttgtttatgttgtttcgttgatcgtggtgttagctttggtcttgtgtttctatttactgatttcggagatagccctttgttaggaggcgtttcctata 14566630  T
Q  165 -ggtttttggatttttctttatt--ttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagc 260  Q
     ||||||||||||||| ||  ||  |||||||||||||| | |||||||||| ||||| |||||| ||| ||||| |||||||| | ||||||||||| |    
T  14566631 gggtttttggattttttttctttgattcacgggtgtatgaggtttccattgg-gggctccccatctatcatttgtatgttgctattttaagactcctaac 14566729  T
Q  261 ctagcact--tt----ttgtgctggttaagattcattgctatcttaataaatttcattttacctttttc 323  Q
    ||||||||  ||    ||||||||||||||||||||||| || |||||| |||  |||||| |||||||    
T  14566730 ctagcactccttgtgcttgtgctggttaagattcattgcgattttaatacattctattttagctttttc 14566798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 65 - 287
Target Start/End: Original strand, 23054823 - 23055046
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||   |||  ||||||  |||||||||||||  |||| |||||    
T  23054823 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttagtgtttctatttatagtttttggagataatcctttgttaggaggtgttttctata 23054922  T
Q  165 ggtttt-tggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcct 262  Q
    |||||| |||||||||  ||    |||||||||||||| |||| |||| |  |||||| |||| ||| ||||| |||| ||| | |||||||| ||||||    
T  23054923 ggttttatggattttttctttgaatcacgggtgtatggatttttcattag-cggcttctcatctatcctttgtatgttactattttaagactcttagcct 23055021  T
Q  263 agcactttttgtgctggttaagatt 287  Q
    | ||||  |||||||||||||||||    
T  23055022 aacactccttgtgctggttaagatt 23055046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 34227681 - 34227765
Alignment:
Q  231 tttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    |||||||||||||||| |||||||| ||||||| |||  |||||||||||||||||||||||| |  ||||||| || |||||||    
T  34227681 tttgtttgttgctactttaagactcttagcctaacacgctttgtgctggttaagattcattgcgagattaataagttccatttta 34227765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 24958272 - 24958355
Alignment:
Q  231 tttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcatttt 314  Q
    ||||| |||||||||| ||||||||||||||||||| |  |||||||||| | |||||||||| || |||||||||| ||||||    
T  24958272 tttgtatgttgctactttaagactcctagcctagcattccttgtgctggtcaggattcattgcaattttaataaattccatttt 24958355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 6409554 - 6409420
Alignment:
Q  84 ttgatcgtggtgttagatttgtttt-ggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttct- 181  Q
    ||||| |||||||||| |||||||| |||||||   |||||| |||||  |||||||||||||||||  ||  ||| |||||||||||| || | || |     
T  6409554 ttgattgtggtgttagctttgtttttggtgttttcttttatttatttcgaagatagccctttgttagatgatattttctataggttttttgaatattatc 6409455  T
Q  182 ttattttcacgggtgtatgggttttccattggagg 216  Q
    ||   | ||||||||||||||||||||||||||||    
T  6409454 tttgatgcacgggtgtatgggttttccattggagg 6409420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 50626603 - 50626521
Alignment:
Q  231 tttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcatttt 314  Q
    ||||| |||||||||| || |||||||||||||  |||||||||| |||| | || ||||||  || |||||||||||||||||    
T  50626603 tttgtatgttgctactttacgactcctagcctaa-actttttgtgttggtcatgactcattgtgattttaataaatttcatttt 50626521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 6409634 - 6409594
Alignment:
Q  29 agttgtttttgcggcagttgtgacgatgcttgaggattttg 69  Q
    ||||||||||| ||||||||||| |||| ||||||||||||    
T  6409634 agttgtttttgtggcagttgtgatgatgtttgaggattttg 6409594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 52721866 - 52721910
Alignment:
Q  271 ttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    |||||||||||| |||||||||  || ||||||||||||||||||    
T  52721866 ttgtgctggttaggattcattgtgattttaataaatttcatttta 52721910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 11698838 - 11699131
Alignment:
Q  19 ggtggtagatagttgtttttgcggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttcta 118  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||| |  |||||||||||||||||    
T  11698838 ggtggtaga-agttgtttttgtggcagttgtgacgatgcttgatgattttgtttatgttgtttcgttgctcgaggtgttcgcattgttttggtgtttcta 11698936  T
Q  119 tttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggc 218  Q
    |||||| ||||| ||||| |||||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | ||||    
T  11698937 tttattgatttcggagatggccctttgttaggaggtatttcctatcggtttttggatttttctttattttcacgggtgtatgggttttctatttg-gggc 11699035  T
Q  219 ttcccatcatcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    || | |||||| |||||||||||||||| |||||||| || |||||||||  |||||  ||||||||||||||| |||||| ||||||| |||||||    
T  11699036 tt-ctatcatcctttgtttgttgctactataagactcttaacctagcactccttgtggcggttaagattcattgttatcttcataaattccatttta 11699131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 68 - 321
Target Start/End: Complemental strand, 3301996 - 3301738
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttg-ttaggagacgtttcctatagg 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |||| ||||||| |||||||| || |    
T  3301996 tgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgattttagagatagccatttgtttaggaggcgtttcctctaag 3301897  T
Q  167 ttttt-ggatttttctttatt--ttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcct 262  Q
    ||||| |||||||| ||  ||  ||||| ||||||||||||||||||| | | ||| |||||| ||| ||| | |||||||||| ||||||| ||| | |    
T  3301896 tttttaggattttttttctttgattcacaggtgtatgggttttccattag-gagctccccatctatcatttatatgttgctactttaagacttctacctt 3301798  T
Q  263 agcactttttgtgctggtt-aagattcattgctatcttaataaatttcattttacctttt 321  Q
    |  |||  ||||||||||| |||||||||||| || |||||||||||||||||| |||||    
T  3301797 aatactccttgtgctggttaaagattcattgcgattttaataaatttcattttaactttt 3301738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 66 - 315
Target Start/End: Complemental strand, 29550166 - 29549916
Alignment:
Q  66 tttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcc--tat 163  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||| |  |||    
T  29550166 tttgtttatgttgtttcgttgatcgtggtgttagctttattttggtgtttctatttattgatttcggagatagccctttgttatgaggcgttttctatat 29550067  T
Q  164 aggtttttggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcct 262  Q
    |  |||||| ||||||  ||   |||| | ||||||||  ||| |||||  |||||  ||||| ||| ||| | |||||||||| |||||||||||||      
T  29550066 atttttttgaattttttctttgattcatgcgtgtatggacttttcattg--gggctctccatctatcctttatatgttgctactttaagactcctagcga 29549969  T
Q  263 agcactttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    | |||| ||| | | |||||||||||||||| || ||||||||||| ||||||    
T  29549968 aacactctttataccggttaagattcattgcgattttaataaattttatttta 29549916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 65 - 321
Target Start/End: Complemental strand, 1778151 - 1777892
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgtttt-ggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctat 163  Q
    ||||||||||||||||||||||||||||||| ||  |||||||| |||||||||||||||| |||||||||||| | ||||| || ||| | ||||||||    
T  1778151 ttttgtttatgttgtttcgttgatcgtggtgataactttgtttttggtgtttctatttattgatttcagagataactctttgatacgaggcatttcctat 1778052  T
Q  164 agg--tttttggatttttctttatt--ttcacgggtg--tatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcc 256  Q
    |||  | ||||||||||| ||  ||  | |||| |||  ||||||||||||||||| ||||| |||||| ||  ||||| ||||||||||     ||||     
T  1778051 agggttgtttggattttttttctttgatgcacgagtgtatatgggttttccattgg-gggctccccatctattctttgtatgttgctact----tactct 1777957  T
Q  257 tagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcattttacctttt 321  Q
    |||| |||||||  || ||||||||||||||||||   || |||| ||||| ||||||| |||||    
T  1777956 tagcttagcactccttatgctggttaagattcatttgaattttaagaaattccattttagctttt 1777892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 39020786 - 39020947
Alignment:
Q  102 ttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctatagg-tttttggatttttctttattttcacgggtgtatg 200  Q
    ||||||||||||||||||||||| ||||| || |||| | ||||||||||| ||||||| ||||| |||||||||||||| ||   |||||  ||||||     
T  39020786 ttgttttggtgtttctatttattgatttcggatatagtcatttgttaggaggcgtttcccataggttttttggatttttcctttgattcacatgtgtatc 39020885  T
Q  201 ggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcct 262  Q
     |||||||||||| ||||| | |||| ||| |||||  ||||||||| || ||||||||||||    
T  39020886 agttttccattgg-gggctccacatctatcctttgtacgttgctactttacgactcctagcct 39020947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 3959112 - 3959180
Alignment:
Q  251 gactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcattttacctt 319  Q
    |||||||| |||||||||| |||||||||| | |||||||||  || ||||||||||||||||| ||||    
T  3959112 gactcctaccctagcacttcttgtgctggtcaggattcattgtgattttaataaatttcatttttcctt 3959180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 39020736 - 39020770
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttag 99  Q
    |||||||||||||||||||||||| ||||||||||    
T  39020736 ttttgtttatgttgtttcgttgattgtggtgttag 39020770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 1778199 - 1778159
Alignment:
Q  29 agttgtttttgcggcagttgtgacgatgcttgaggattttg 69  Q
    ||||||||||| |||||||||||| ||| ||||||||||||    
T  1778199 agttgtttttgtggcagttgtgacaatgtttgaggattttg 1778159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 47718877 - 47718833
Alignment:
Q  271 ttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    |||||||||||| |||||||||  || ||||||||||||||||||    
T  47718877 ttgtgctggttaggattcattgtgattttaataaatttcatttta 47718833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 46 - 296
Target Start/End: Complemental strand, 20740196 - 20739948
Alignment:
Q  46 ttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttg 145  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||||| ||||| ||||||||||||||    
T  20740196 ttgtgacgatgcttgaggattttgtttatgttgttttgttgatcgtggtgttagctatattttggtgtttctatttattgatttcggagatagccctttg 20740097  T
Q  146 ttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatcatcttttgtttgttgctac 245  Q
    ||||||| |||||| ||||| |||||| ||||||||||||||||| ||||||| ||||||| |||||| |||||||| | |||| |||||||||||||||    
T  20740096 ttaggaggcgtttcttatagatttttgaatttttctttattttcatgggtgtaggggtttt-cattgg-gggcttccaaccatcctttgtttgttgctac 20739999  T
Q  246 tgtaagactcctagcctagcactttttgtgctggttaagattcattgctat 296  Q
    ||||||||||||||| || ||||  ||||||||||||||||||||||||||    
T  20739998 tgtaagactcctagcttaacactccttgtgctggttaagattcattgctat 20739948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 142 - 322
Target Start/End: Complemental strand, 1869427 - 1869249
Alignment:
Q  142 tttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatcatcttttgtttgttg 241  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||| ||||| ||||||  |||||||||||||| |||||||||||    
T  1869427 tttgttaggaggcgtttccaataggtttttggatttttctttattttcagggatgtatgagttttacattgg--ggcttcccatcatcctttgtttgttg 1869330  T
Q  242 ctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcattttaccttttt 322  Q
    ||| ||||||||||| ||||||| | |  |||||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  1869329 ctaatgtaagactccgagcctagtattccttgtgctggttaagattcattgttatcttaataaattccattttagcttttt 1869249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 65 - 293
Target Start/End: Original strand, 34213936 - 34214166
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||| | |||||||||  |||| ||||||| ||||||||||||| | ||| |||||    
T  34213936 ttttgtttatgttgttttgttgatcgtggtgttaactttgttttggtgctactatttattgttttcggagatagtcctttgttaggaggcattttctata 34214035  T
Q  165 ggtttttg-gatttttctttattttcacgggtgtatgggttttccattggagg-gcttcccatcatcttttgtttgttg-ctactgtaagactcctagcc 261  Q
    |||||||  |||||||  ||   ||||| |||||||| |||||||||||||||  | || ||| ||| ||||| |||||  |||| |||||||| | | |    
T  34214036 ggtttttttgattttttctttgattcacaggtgtatgagttttccattggaggctcctcacat-atcctttgtatgttgtttactttaagactcatggtc 34214134  T
Q  262 tagcactttttgtgctggttaagattcattgc 293  Q
    ||||||| |||||||||| |||||||||||||    
T  34214135 tagcactctttgtgctggctaagattcattgc 34214166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 3524106 - 3524222
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgtt-ttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctat 163  Q
    ||||||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||||| ||||  ||||||||||||||||| ||| ||||||||||    
T  3524106 ttttgtttatgttgtttcgttgatcatggtgatagctttgttgttggtgtttctatttattgattttggagatagccctttgttaagaggcgtttcctat 3524205  T
Q  164 ag-gtttttggattttt 179  Q
    ||  |||||||||||||    
T  3524206 agattttttggattttt 3524222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 315
Target Start/End: Complemental strand, 21880988 - 21880758
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||| |        ||  |||  |||||||||||||||| |||| |||||||||||    
T  21880988 ttttgtttatgttgcttcgttgatcgtggtgttagctttgttttggtgct--------ttgtttttggagatagccctttgttgggaggcgtttcctata 21880897  T
Q  165 gg-tttttggatttttctttatt--ttcacgggtgtatgggttttccattggagggcttcccat-catcttttgtttgttgctactgtaagactcctagc 260  Q
    || ||||||||||||| ||  ||  ||||||||||||||           ||||     ||||| |||| ||||| ||||| | || ||||| |||||||    
T  21880896 ggttttttggattttttttctttgattcacgggtgtatg-----------ggag----ccccatccatcctttgtatgttg-ttctttaagattcctagc 21880813  T
Q  261 ctagcactttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    ||||||||  ||||||||||||||||||||||| || ||||||||||||||||||    
T  21880812 ctagcactccttgtgctggttaagattcattgcgattttaataaatttcatttta 21880758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 319
Target Start/End: Original strand, 34503405 - 34503491
Alignment:
Q  232 ttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcattttacctt 319  Q
    |||| |||||||||| || |||||||||||||||| |  || ||||||||| |||||||||  || || |||||||||||||| ||||    
T  34503405 ttgtatgttgctactttacgactcctagcctagcattccttctgctggttaggattcattgtgat-tttataaatttcattttgcctt 34503491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 315
Target Start/End: Original strand, 32018598 - 32018652
Alignment:
Q  261 ctagcactttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    |||||| || |||||||||||| |||||||||  || ||||||||||||||||||    
T  32018598 ctagcatttcttgtgctggttaggattcattgtgattttaataaatttcatttta 32018652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 13032394 - 13032350
Alignment:
Q  271 ttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    |||||||||||| |||||||||  || ||||||||||||||||||    
T  13032394 ttgtgctggttaggattcattgtgattttaataaatttcatttta 13032350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 21881036 - 21880996
Alignment:
Q  29 agttgtttttgcggcagttgtgacgatgcttgaggattttg 69  Q
    |||| |||||| |||||||||||||||| ||||||||||||    
T  21881036 agttatttttgtggcagttgtgacgatgtttgaggattttg 21880996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 65 - 323
Target Start/End: Complemental strand, 43275521 - 43275262
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||| |||||    
T  43275521 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttgatgtttctatttattgatttcggagatagccctttgttaggacacgttttctata 43275422  T
Q  165 ggt-ttttggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcct 262  Q
    ||| |||||||||||| ||| | |||||  |||||||| ||||||||| | ||||| ||| || ||| ||||| |||||||||| || ||||||||| ||    
T  43275421 ggttttttggatttttttttttattcacaagtgtatggattttccatttg-gggctccccttctatcctttgtatgttgctactttatgactcctaggct 43275323  T
Q  263 agcactttttgtgctggttaagattcattgctatcttaataaatttcattttacctttttc 323  Q
    ||||||  || ||||| |||||||||||||| || ||||||||||||||| || |||||||    
T  43275322 agcactccttatgctgattaagattcattgcgattttaataaatttcattctagctttttc 43275262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 69 - 315
Target Start/End: Original strand, 18270266 - 18270512
Alignment:
Q  69 gtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctatagg-t 167  Q
    |||||||||||||||||||||||| |||||| || ||||||||||||||||| ||| |||||||||||||| ||||| |||||| ||||||||||||| |    
T  18270266 gtttatgttgtttcgttgatcgtgctgttagcttggttttggtgtttctattaattgatttcagagatagctctttgctaggaggcgtttcctataggtt 18270365  T
Q  168 ttttggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcctagca 266  Q
    ||||||||||||  ||   |||||||||||||||||||| ||||||| |||  |||||| ||| ||||| |||| ||| | ||| ||||  |||||||||    
T  18270366 ttttggattttttctttgattcacgggtgtatgggtttttcattgga-ggcaccccatctatcctttgtatgttacta-tttaaaactcacagcctagca 18270463  T
Q  267 ctttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
     || |||| | |||||||||||||| | || |||||||||| |||||||    
T  18270464 tttcttgtaccggttaagattcatttcaattttaataaattccatttta 18270512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 65 - 322
Target Start/End: Original strand, 893491 - 893762
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    |||| |||||||| |||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  893491 ttttatttatgttttttcattgatcgtggtgttagctttgttttggtgtttctatttattgatttcagagatagccctttgttaggaggcgtttcctata 893590  T
Q  165 --ggtttttggatttttctttattttcacgggtgtat--gggttttccat---tggagggcttcccatc--------atcttttgtttgttgctactgta 249  Q
        |||||| ||||||  ||   |||||||||||||  ||| |||||||   | | |||| |||||||        ||| ||||| |||| ||||| ||    
T  893591 attttttttgaattttttctttgattcacgggtgtatggggggtttccattaattgggggc-tcccatctatgatctatcatttgtatgtttctacttta 893689  T
Q  250 agactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcattttaccttttt 322  Q
    |||||||||||||||||||  ||||||||||||||||| ||||| || |||||||||| ||||||| ||||||    
T  893690 agactcctagcctagcactccttgtgctggttaagatttattgcgattttaataaattccattttagcttttt 893762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 322
Target Start/End: Original strand, 3364057 - 3364298
Alignment:
Q  83 gttgatcgtggtgttagatttgttttg-gtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggttttt-ggattt-tt 179  Q
    |||||| |||||| ||| ||||||||  |||||| |||||||| ||||  |||||||| |||||| | ||| |||||| |||| |||||| |||||| ||    
T  3364057 gttgatggtggtgatagttttgtttttagtgtttttatttattgattttggagatagctctttgtaatgaggcgtttcttataagttttttggatttatt 3364156  T
Q  180 ctttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctg 278  Q
    ||||     ||||| |||||| ||||| |||||| ||||| | |||| ||| ||||| || || |||| |||||||| || |||| ||||  ||||||||    
T  3364157 ctttgaag-cacggatgtatgagtttttcattgg-gggctcctcatctatcctttgtatgctgttactttaagactcataacctaacactccttgtgctg 3364254  T
Q  279 gttaagattcattgctatcttaataaatttcattttaccttttt 322  Q
    ||||||||||||||| || |||||||||| ||||||| ||||||    
T  3364255 gttaagattcattgcaattttaataaattccattttatcttttt 3364298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 3576867 - 3576911
Alignment:
Q  68 tgtttatgttgtttcgttgatcgtggtgttagatttgttttggtg 112  Q
    ||||||||||||||||||||||||| |||||| || |||||||||    
T  3576867 tgtttatgttgtttcgttgatcgtgctgttagcttggttttggtg 3576911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 20585550 - 20585594
Alignment:
Q  271 ttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    ||||||||||||||||||||||  || ||||||||||||||||||    
T  20585550 ttgtgctggttaagattcattgtgattttaataaatttcatttta 20585594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 314
Target Start/End: Original strand, 27741827 - 27741914
Alignment:
Q  227 atcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcatttt 314  Q
    ||||||||| |||||||||| || |||||||| |||||||||  ||||| | || | || ||||||  || |||||||||||||||||    
T  27741827 atcttttgtatgttgctactttacgactcctaacctagcactccttgtgatagtcatgactcattgtgattttaataaatttcatttt 27741914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 50735378 - 50735441
Alignment:
Q  252 actcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    |||| ||||||||||||  || |||||||||||||||||||| || |||||||| | |||||||    
T  50735378 actcttagcctagcactcattttgctggttaagattcattgcaattttaataaactccatttta 50735441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 50777477 - 50777414
Alignment:
Q  252 actcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatttcatttta 315  Q
    |||| ||||||||||||  || |||||||||||||||||||| || |||||||| | |||||||    
T  50777477 actcttagcctagcactcattttgctggttaagattcattgcaattttaataaactccatttta 50777414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 5e-63; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 65 - 322
Target Start/End: Complemental strand, 20860867 - 20860611
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||  |||| ||||||||||||| ||||||| |||||||||||    
T  20860867 ttttgtttatgttgtttcgttgattgcggtgttagctttgttttggtgtttctatttattggtttcggagatagcccttttttaggaggcgtttcctata 20860768  T
Q  165 ggtttttggatttttctttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagccta 263  Q
    |  ||||||||||||||||   |||||  ||||||| |||||||||||| | ||| |||||| ||| ||||| |||||||||| |||||||||| |||||    
T  20860767 gtgttttggatttttcttt-gattcacttgtgtatgagttttccattgg-gagctccccatctatcctttgtatgttgctactttaagactcctcgccta 20860670  T
Q  264 gcactttttgtgctggttaagattcattgctatcttaataaatttcattttaccttttt 322  Q
     ||||  ||||||||||||||||||||||| || |||||||||| ||||||| ||||||    
T  20860669 acactccttgtgctggttaagattcattgcgattttaataaattccattttaacttttt 20860611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 65 - 322
Target Start/End: Complemental strand, 10408396 - 10408138
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||||| |||||| ||| |||||  ||| |||||||||||||||||||| ||||| |||||| ||||||||||||||  ||||||||||    
T  10408396 ttttgtttatgttgtttagttgattgtgatgttaactttattttggtgtttctatttattgatttcggagataaccctttgttaggaggtgtttcctata 10408297  T
Q  165 ggt-ttttggatttt-tctttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcc 261  Q
    ||| ||||||||||| |||||   |||| |||||||||||||||||||||| ||||| |||||| ||  ||||| |||||| ||| ||||||| ||||||    
T  10408296 ggttttttggattttatcttt-gattcatgggtgtatgggttttccattgg-gggctccccatctatgctttgtatgttgcaactctaagacttctagcc 10408199  T
Q  262 tagcactttttgtgctggttaagattcattgctatcttaataaatttcattttaccttttt 322  Q
    || ||||  || |||||||||||||| ||||  || |||||||||| ||||||| ||||||    
T  10408198 taacactccttttgctggttaagatttattgtgattttaataaattccattttatcttttt 10408138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 112 - 321
Target Start/End: Complemental strand, 5994148 - 5993937
Alignment:
Q  112 gtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggttttt-gga--tttttctttattttcacgggtgtatgggttttcc 208  Q
    |||||||| |||| |||||  | ||||| |||||||||||| |||||||||||||||||| |||  |||||||||  |  ||||||||||||||||||||    
T  5994148 gtttctatctattgatttcgaatatagctctttgttaggaggcgtttcctataggttttttggaattttttctttgatg-cacgggtgtatgggttttcc 5994050  T
Q  209 attggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattgctatcttaataaatt 307  Q
    ||||||||  | |||||| ||| ||||| |||||||||| |||||||||||||||||||||  |||||||| |||||||||||||| || ||||||||||    
T  5994049 attggaggt-tccccatctatcctttgtatgttgctactttaagactcctagcctagcactccttgtgctgattaagattcattgcgattttaataaatt 5993951  T
Q  308 tcattttacctttt 321  Q
     ||||||| |||||    
T  5993950 ccattttagctttt 5993937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 84 - 315
Target Start/End: Complemental strand, 6443560 - 6443330
Alignment:
Q  84 ttgatcgtggtgttagatttgtttt-ggtgtttctatttattaatttcagagatagccctttgttaggagacgtttccta--taggtttttggatttttc 180  Q
    ||||| |||||||||| |||||||| ||||||||  |||||| |||| ||||||||||||||| || | |  |||| |||  ||   |||||||||||      
T  6443560 ttgattgtggtgttagctttgtttttggtgtttccttttattgattttagagatagccctttggtaagtggtgttttctatctattattttggattttat 6443461  T
Q  181 tttattttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctgg 279  Q
     |||  | |||| ||||||| ||||| |||     |||| |||||| ||| ||||| |||||||||  |||||||||||||||||||||  |||||||||    
T  6443460 attagatgcacgagtgtatgagtttttcat-----ggctccccatctatcatttgtatgttgctacgataagactcctagcctagcactccttgtgctgg 6443366  T
Q  280 ttaagattcattgctatcttaataaatttcatttta 315  Q
    ||| |||||||||  || ||||||||||||||||||    
T  6443365 ttaggattcattgtgattttaataaatttcatttta 6443330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 95
Target Start/End: Complemental strand, 5994181 - 5994151
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtg 95  Q
    |||||||||||||||||||||||||||||||    
T  5994181 ttttgtttatgttgtttcgttgatcgtggtg 5994151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 5994229 - 5994189
Alignment:
Q  29 agttgtttttgcggcagttgtgacgatgcttgaggattttg 69  Q
    ||||||||||| || ||||||||||||| ||||||||||||    
T  5994229 agttgtttttgtggtagttgtgacgatgtttgaggattttg 5994189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 6443636 - 6443596
Alignment:
Q  29 agttgtttttgcggcagttgtgacgatgcttgaggattttg 69  Q
    ||||||||||| ||||||||||| |||| ||||||||||||    
T  6443636 agttgtttttgtggcagttgtgatgatgtttgaggattttg 6443596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 65 - 323
Target Start/End: Complemental strand, 250844 - 250577
Alignment:
Q  65 ttttgtttatgttgtttcgttgatcgtggtgttagatttgttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctata 164  Q
    ||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||    
T  250844 ttttgtttatgttgtttcgttgatcgtggtgttagctttggtcttgtgtttctatttactgatttcggagatagccctttgttaggaggcgtttcctata 250745  T
Q  165 -ggtttttggatttttctttatt--ttcacgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagc 260  Q
     ||||||||||||||| ||  ||  |||||||||||||| | |||||||||| ||||| |||||| ||| ||||| |||||||| | ||||||||||| |    
T  250744 gggtttttggattttttttctttgattcacgggtgtatgaggtttccattgg-gggctccccatctatcatttgtatgttgctattttaagactcctaac 250646  T
Q  261 ctagcact--tt----ttgtgctggttaagattcattgctatcttaataaatttcattttacctttttc 323  Q
    ||||||||  ||    ||||||||||||||||||||||| || |||||| |||  |||||| |||||||    
T  250645 ctagcactccttgtgcttgtgctggttaagattcattgcgattttaatacattctattttagctttttc 250577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 292
Target Start/End: Complemental strand, 53993 - 53805
Alignment:
Q  105 ttttggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggtttttggatttttct-ttattttcacgggtgtatgggt 203  Q
    ||||||||||||  |||||| ||||  |||||| ||||||||||||||| ||||||| ||||||||| || |||| | ||   | |||||||||||| ||    
T  53993 ttttggtgtttccttttattgattttggagatatccctttgttaggagatgtttcctgtaggttttttgaattttgtctttgatgcacgggtgtatgagt 53894  T
Q  204 tttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattcattg 292  Q
    || | ||||| | ||| |||||| |||  |||| |||||||||| || ||||||||||||| |||   |||||||||||| |||||||||    
T  53893 ttacaattgg-gtgctccccatctatccattgtatgttgctactttacgactcctagcctaacacgcattgtgctggttatgattcattg 53805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 307
Target Start/End: Original strand, 6007 - 6223
Alignment:
Q  93 gtgttagatttgtttt-ggtgtttctatttattaatttcagagatagccctttgttaggagacgtttcctataggttttt-ggatttt-tctttattttc 189  Q
    ||||||| |||||||| |||||||   |||||| |||||  ||||| |||||||||||||   ||||| |||| |||||| ||||||| |||||  |  |    
T  6007 gtgttagctttgtttttggtgttttcttttattgatttcgaagataaccctttgttaggatgtgtttcttataagttttttggattttgtctttgatg-c 6105  T
Q  190 acgggtgtatgggttttccattggagggcttcccatc-atcttttgtttgttgctactgtaagactcctagcctagcactttttgtgctggttaagattc 288  Q
    |||| ||||||||||||||||||| ||||| |||||| ||| ||| | |||||||||  |||||||| ||||||| ||||  ||||||| ||||  ||||    
T  6106 acggatgtatgggttttccattgg-gggctccccatctatcctttatatgttgctacattaagactcatagcctaacactccttgtgctagttagaattc 6204  T
Q  289 attgctatcttaataaatt 307  Q
    ||||  || ||||||||||    
T  6205 attgtgattttaataaatt 6223  T

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