View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11123_low_9 (Length: 401)
Name: NF11123_low_9
Description: NF11123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11123_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 20)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 3957617 - 3957242
Alignment:
| Q |
11 |
caaaggggagaggaaaaaaggagagagatcaataatcatatcatcatgtgctgtcctgtactcgaaccactctggaacactacttccaggatacaaatac |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3957617 |
caaaggggagaggaaaaaaggagagagatcaataatcatatcatcctgtgctgtcctgtacttgaaccactctggaacactacttccaggatacaaatac |
3957518 |
T |
|
| Q |
111 |
actgcttgataagaatcaaatttatctttgtaaccaacattgctttcattgcttttagcatgatgtaacagtgccgctgaatgtcgatatgcaaacttca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3957517 |
actgcttgataagaatcaaatttatctttgtaatcagcattgctttcattgcttttagcatgatgtaacagtgccgctgaatgtcgatatgcaaacttca |
3957418 |
T |
|
| Q |
211 |
tcaaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttc-ttgttttccttgaatt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3957417 |
tcaaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttctttgttttccttgaatt |
3957318 |
T |
|
| Q |
310 |
gttgagcaacagaagggaaaaatacagtcttcaatgattcacattcaacaagtagagtttcaactgatgaaggaag |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3957317 |
gttgagcaacagaagggaaaaatacagtcttcaatgattcacattcaacaagtagagtttcaactgatgaaggaag |
3957242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 385
Target Start/End: Original strand, 4023077 - 4023450
Alignment:
| Q |
9 |
agcaaaggggagaggaaaaaaggagagagatcaataatcatatcatcatgtgctgtcctgtactcgaaccactctggaacactacttccaggatacaaat |
108 |
Q |
| |
|
|||||||||||||| || ||||||||||||| |||||| ||||| | || |||| ||||||| ||||||||||||| ||||||||||||||| | || |
|
|
| T |
4023077 |
agcaaaggggagagataatgtggagagagatcaacaatcatgtcatcctttgttgtcttgtactccaaccactctggaatactacttccaggataaacat |
4023176 |
T |
|
| Q |
109 |
acactgcttgataagaatcaaatttatctttgtaaccaacattgctttcattgcttttagcatgatgtaacagtgccgctgaatgtcgatatgcaaactt |
208 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| |||||| | || |||| ||||| || | ||||| |||||| |||||| |
|
|
| T |
4023177 |
acactgcttgataagaatcaaagttatctttgtaatcaacataactttcaacgtg------atcatgttccagtgtcgataaatgttgatatgtaaactt |
4023270 |
T |
|
| Q |
209 |
catcaaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaat |
308 |
Q |
| |
|
|||||||| || |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4023271 |
tatcaaattcatttgcagattcaacccaatatttatgagagaatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaat |
4023370 |
T |
|
| Q |
309 |
tgttgagcaac---agaagggaaaaatacagtcttcaatgattcacattcaacaagtagagtttcaactgatgaaggaag |
385 |
Q |
| |
|
|||| || ||| |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4023371 |
tgttcagaaactgttgaagggaacaatacagtcttcagtgatctacattcaacaagtagagtttcaactgatgaaggaag |
4023450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 33 - 385
Target Start/End: Original strand, 3985025 - 3985374
Alignment:
| Q |
33 |
gagagatcaataatcatatcatcatgtgctgtcctgtactcgaaccactctggaacactacttccaggatacaaatacactgcttgataagaatcaaatt |
132 |
Q |
| |
|
|||||||||| ||||||||||| | || |||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
3985025 |
gagagatcaacaatcatatcattctttgttgtcttgtactccaaccactctggaacactacttccaggatatacatacactgcttgataagaatcaagga |
3985124 |
T |
|
| Q |
133 |
tatctttgtaaccaacattgctttcattgcttttagcatgatgtaacagtgccgctgaatgtcgatatgcaaacttcatcaaattgatctgcacattcaa |
232 |
Q |
| |
|
||||||||||| |||||| ||||||| |||| || |||| ||||| || | ||||| |||||||||||| |||||||||||| || | |||||| |
|
|
| T |
3985125 |
tatctttgtaatcaacatagctttcaa--cttt----atcatgttccagtgtcgataaatgttgatatgcaaactccatcaaattgatttgaagattcaa |
3985218 |
T |
|
| Q |
233 |
cccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgttgagcaac---agaagggaaa |
329 |
Q |
| |
|
|||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
3985219 |
cccaatatttatgagagaacgttcatccaatttgaagcaattccagaactcaatccttttcttgttttcctttaattgttcagcaactgttgaagggaaa |
3985318 |
T |
|
| Q |
330 |
aatacagtcttcaatgattcacattcaacaagtagagtttcaactgatgaaggaag |
385 |
Q |
| |
|
||||||| ||||| ||| |||| ||||||||||||||||||| |||||| ||||| |
|
|
| T |
3985319 |
aatacagacttcagtgacacacagtcaacaagtagagtttcaagtgatgatggaag |
3985374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 30 - 385
Target Start/End: Complemental strand, 3922139 - 3921781
Alignment:
| Q |
30 |
ggagagagatcaataatcatatcatcatgtgctgtcctgtactcgaaccactctggaacactacttccaggatacaaatacactgcttgataagaatcaa |
129 |
Q |
| |
|
||||||||||||| |||||| |||| || |||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3922139 |
ggagagagatcaacaatcatgccatccattgttgtcttgtactccaaccactttggaacactacttccaggatacacatacactgcttgataagaatcaa |
3922040 |
T |
|
| Q |
130 |
atttatctttgtaaccaacattgctttcattgcttttagcatgatgtaacagtgccgctgaatgtcgatatgcaaacttcatcaaattgatctgcacatt |
229 |
Q |
| |
|
| |||||||||||| |||||| |||||| || | | ||| |||| ||||| | | ||||| ||| || |||||||||||||||||| |||| ||| |
|
|
| T |
3922039 |
agttatctttgtaatcaacataactttca--gcatatt-catcatgttccagtgttgataaatgttgatgtgtaaacttcatcaaattgatttgcagatt |
3921943 |
T |
|
| Q |
230 |
caacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgttgagcaac---agaaggg |
326 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
3921942 |
caacccaatatttatcagagaaagttcatccaagttgaagcaattccagaactcaacccttttcttgttttccttgaattgttcagcaactgttgaaggg |
3921843 |
T |
|
| Q |
327 |
aaaaatacagtcttcaatgattcaca---ttcaacaagtagagtttcaactgatgaaggaag |
385 |
Q |
| |
|
|| ||||||||||| | ||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
3921842 |
aacaatacagtctttagtgattcacagttgtcaacaagtagactttcaactgatgaaggaag |
3921781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 62 - 381
Target Start/End: Complemental strand, 3935455 - 3935136
Alignment:
| Q |
62 |
tgtcctgtactcgaaccactctggaacactacttccaggatacaaatacactgcttgataagaatcaaatttatctttgtaaccaacattgctttcattg |
161 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
3935455 |
tgtcttgtactcaaaccaatctggaacactacttccagaatacacatacaatgcttgataagaatcaaagttatctttgtaatcaacataagtttcaaca |
3935356 |
T |
|
| Q |
162 |
cttttagcatgatgtaacagtgccgctgaatgtcgatatgcaaacttcatcaaattgatctgcacattcaacccaatatttatgagagagcattcatcca |
261 |
Q |
| |
|
| | ||| |||| || || | | ||| | ||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| | ||||||| |
|
|
| T |
3935355 |
---taatcatcatgttccactgttgataaatcttgatatgcaaacttcatcaaattgatttgcagattcaacccaatatttatcagagaacgctcatcca |
3935259 |
T |
|
| Q |
262 |
agttcaagcaattccagaactcaatccttttcttgttttccttgaattgttgagcaac---agaagggaaaaatacagtcttcaatgattcacattcaac |
358 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||| ||||||| ||||| ||| ||||| | ||| |
|
|
| T |
3935258 |
agttcaagcaattccagaacttaacttctttcttgttttccttgaattgttcagcaactgttgaagggaacaatacagacttcagtgagtcacagtgaac |
3935159 |
T |
|
| Q |
359 |
aagtagagtttcaactgatgaag |
381 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
3935158 |
aagtagaatttcaactgatgaag |
3935136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 190 - 385
Target Start/End: Original strand, 4000336 - 4000534
Alignment:
| Q |
190 |
aatgtcgatatgcaaacttcatcaaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatcct |
289 |
Q |
| |
|
||||| ||||||||||||| || | |||||| | || ||| ||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4000336 |
aatgttgatatgcaaacttgattagattgattttcatattgaacccaatatttacgagagaatgttcatccaagttgaagcaattccagaactcaatcct |
4000435 |
T |
|
| Q |
290 |
tttcttgttttccttgaattgttgagcaa---cagaagggaaaaatacagtcttcaatgattcacattcaacaagtagagtttcaactgatgaaggaag |
385 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4000436 |
tttcttgttttccttgaattgttcagaaattgttgaagggaacaatacagtcttcagtgatatacattcaacaagtagagtttcaactgataaaggaag |
4000534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 205 - 385
Target Start/End: Original strand, 3815805 - 3815991
Alignment:
| Q |
205 |
acttcatcaaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttcctt |
304 |
Q |
| |
|
||||||| |||||||| || ||||||||||||| |||||||||||| | ||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3815805 |
acttcattaaattgatttgaacattcaacccaacatttatgagagaactttcatccaagttctcgcaattccagaactcaacacttttcttgttttcctt |
3815904 |
T |
|
| Q |
305 |
gaattgttgagcaac---agaagggaaaaatacagtcttcaatgattcaca---ttcaacaagtagagtttcaactgatgaaggaag |
385 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||||||||| ||| | | || |||||||||||||||||||||||||||||| |
|
|
| T |
3815905 |
gaattgttcagcaactgttgaagggaacaatacagtcttcagtgaaaaagaatctttaacaagtagagtttcaactgatgaaggaag |
3815991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 205 - 385
Target Start/End: Original strand, 3808231 - 3808417
Alignment:
| Q |
205 |
acttcatcaaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttcctt |
304 |
Q |
| |
|
||||||| |||||||| || ||||||||||||| |||||||||||| | ||||||||||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
3808231 |
acttcattaaattgatttgaacattcaacccaacatttatgagagaactttcatccaagttcttgcaatgccagaactcaacacttttcttgttttcctt |
3808330 |
T |
|
| Q |
305 |
gaattgttgagcaac---agaagggaaaaatacagtcttcaatgattcaca--ttc-aacaagtagagtttcaactgatgaaggaag |
385 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||||||||| |||| ||| | | |||||||||||||||||||||||||||||| |
|
|
| T |
3808331 |
gaattgttcagcaactgttgaagggaacaatacagtcttcagtgatctacagctgctaacaagtagagtttcaactgatgaaggaag |
3808417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 34 - 385
Target Start/End: Original strand, 4007944 - 4008292
Alignment:
| Q |
34 |
agagatcaataatcatatcatcatgtgctgtcctgtactcgaaccactctggaacactacttccaggatacaaatacactgcttgataagaatcaaattt |
133 |
Q |
| |
|
||||||||| |||||||||||| |||| ||| ||||| | |||||||| ||||| ||||||| ||||||| ||| | ||||||||||||| |||| | |
|
|
| T |
4007944 |
agagatcaacaatcatatcatcctgtgttgttttgtacgccaaccactcaggaacggtacttcctggatacacataaaatgcttgataagaaccaaacgt |
4008043 |
T |
|
| Q |
134 |
atctttgtaaccaacattgctttcattgcttttagcatgatgtaacagtgccgctgaatgtcgatatgcaaacttcatcaaattgatctgcacattcaac |
233 |
Q |
| |
|
| ||||||| ||||||| |||||| ||| | |||| ||||| || | ||||| |||||||||||||||| | |||||| || | ||||||| |
|
|
| T |
4008044 |
ttgtttgtaatcaacattactttcaaca----tag--ttatgttccagtgtcgataaatgttgatatgcaaacttcattatattgatttgaatattcaac |
4008137 |
T |
|
| Q |
234 |
ccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgttgagcaacag---aagggaaaa |
330 |
Q |
| |
|
|||||||||| ||||| | || ||||| |||||| |||||||| ||| || ||||||||||||||||||||| |||| || | | | ||||||| |
|
|
| T |
4008138 |
tcaatatttataagagaacgtttatccaggttcaaacaattccataacagaacccttttcttgttttccttgaactgttcagaagctgttaaagggaacc |
4008237 |
T |
|
| Q |
331 |
atacagtcttcaatgattcacattcaacaagtagagtttcaactgatgaaggaag |
385 |
Q |
| |
|
|||||||||||| ||||||||||||| | | ||||||||||| |||||| ||||| |
|
|
| T |
4008238 |
atacagtcttcagtgattcacattcagccaatagagtttcaagtgatgatggaag |
4008292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 319
Target Start/End: Complemental strand, 3936950 - 3936839
Alignment:
| Q |
207 |
ttcatcaaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttccttga |
306 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||||||| |||| | ||||||| |||||||||||||||||| ||||| ||||||||||| | |
|
|
| T |
3936950 |
ttcattaaattgatttgaacattcaacccaatatttatgagagaacatttaatcaagttccagcaattccagaactcaactctttt-ttgttttccttta |
3936852 |
T |
|
| Q |
307 |
attgttgagcaac |
319 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
3936851 |
attgttcagcaac |
3936839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 3815697 - 3815796
Alignment:
| Q |
31 |
gagagagatcaataatcatatcatcatgtgctgtcctgtactcgaaccactctggaacactacttccaggatacaaatacactgcttgataagaatcaaa |
130 |
Q |
| |
|
||||||||||||||||||||||||| | || |||| ||||||| ||||||||||||| ||||||||||||||||| ||||| ||||| || |||| |||| |
|
|
| T |
3815697 |
gagagagatcaataatcatatcatcctttgttgtcttgtactccaaccactctggaatactacttccaggatacacatacattgcttcatcagaaccaaa |
3815796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 371
Target Start/End: Original strand, 3800046 - 3800230
Alignment:
| Q |
190 |
aatgtcgatatgcaaacttcatcaaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatcct |
289 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| | |||||||| | ||| ||||||||| ||| || ||||||||||||||||| || | |||| | |
|
|
| T |
3800046 |
aatgttgatatgcaaacttcatcaaattaatctgtagattcaaccaattatgtatgagagaaagttcttcaaagttcaagcaattccaaaagttaatcat |
3800145 |
T |
|
| Q |
290 |
tttcttgttttccttgaattgttgagcaac---agaagggaaaaatacagtcttcaatgattcacattcaacaagtagagtttca |
371 |
Q |
| |
|
||||||||||||||| |||||| |||||| |||||||| ||||||| |||| ||| | | | | |||||||||||||||| |
|
|
| T |
3800146 |
tttcttgttttcctttaattgtccagcaactgttgaagggaacaatacagcattcagtgacttatagtgaacaagtagagtttca |
3800230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 3808122 - 3808222
Alignment:
| Q |
30 |
ggagagagatcaataatcatatcatcatgtgctgtcctgtactcgaaccactctggaacactacttccaggatacaaatacactgcttgataagaatcaa |
129 |
Q |
| |
|
||||||||||||| |||| | ||||| | || |||| ||||||| ||||||||||||||| ||||||||||||||| ||||| ||||| || |||| ||| |
|
|
| T |
3808122 |
ggagagagatcaacaatcttgtcatcctttgttgtcttgtactcaaaccactctggaacattacttccaggatacacatacattgcttcatcagaaccaa |
3808221 |
T |
|
| Q |
130 |
a |
130 |
Q |
| |
|
| |
|
|
| T |
3808222 |
a |
3808222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 3998935 - 3999063
Alignment:
| Q |
30 |
ggagagagatcaataatcatatcatcatgtgctgtcctgtactcgaaccactctggaacactacttccaggatacaaatacactgcttgataagaatcaa |
129 |
Q |
| |
|
||||||| |||||||||| | ||||| | || ||| ||||||| ||| |||||| |||||| ||||| ||||| | ||||| ||||||||||||| ||| |
|
|
| T |
3998935 |
ggagagatatcaataatcctgtcatcctttgttgttttgtactccaacgactctgaaacactgcttcctggataaacatacaatgcttgataagaaccaa |
3999034 |
T |
|
| Q |
130 |
atttatctttgtaaccaacattgctttca |
158 |
Q |
| |
|
| |||| ||||||| ||||||| |||||| |
|
|
| T |
3999035 |
acttatgtttgtaatcaacattactttca |
3999063 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 4000210 - 4000274
Alignment:
| Q |
61 |
ctgtcctgtactcgaaccactctggaacactacttccaggatacaaatacactgcttgataagaa |
125 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
4000210 |
ctgtcttgtactccaaccactctggaacactacttccaggatatacatacaatgcttgataagaa |
4000274 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 371
Target Start/End: Original strand, 4217014 - 4217203
Alignment:
| Q |
190 |
aatgtcgatatgcaaacttcatcaaattgatctgcacattcaacccaatatttatgagagagcattcatccaag-----ttcaagcaattccagaactca |
284 |
Q |
| |
|
||||| ||||||||||| ||||| |||| ||||| | |||||||| ||||| ||||||||| ||| || ||| |||||||||||||| || | | |
|
|
| T |
4217014 |
aatgttgatatgcaaacatcatctaattaatctgtagattcaaccaaatatgtatgagagaaagttcttcaaagttcaattcaagcaattccaaaagtta |
4217113 |
T |
|
| Q |
285 |
atccttttcttgttttccttgaattgttgagcaac---agaagggaaaaatacagtcttcaatgattcacattcaacaagtagagtttca |
371 |
Q |
| |
|
||| |||||||||||||||| |||||| |||||| |||||||| ||||||| |||| ||| | | | | |||||||||||||||| |
|
|
| T |
4217114 |
atcattttcttgttttcctttaattgtccagcaactgttgaagggaacaatacagcattcagtgacttatagtgaacaagtagagtttca |
4217203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 3799929 - 3800006
Alignment:
| Q |
62 |
tgtcctgtactcgaaccactctggaacactacttccaggatacaaatacactgcttgataagaatcaaatttatcttt |
139 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||||||||||| ||| | |||| ||||||||||||| |||| | |||||| |
|
|
| T |
3799929 |
tgtcttgtactccaaccactatggaacactacttccagaataaacatacggtgcttgataagaagcaaagtaatcttt |
3800006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 342
Target Start/End: Original strand, 4016597 - 4016681
Alignment:
| Q |
258 |
tccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgttgagcaacagaagggaaaaatacagtcttca |
342 |
Q |
| |
|
||||| |||||||||||| ||| ||| ||||||| |||| ||||||||||||| ||||| |||||||| || |||||||||| |
|
|
| T |
4016597 |
tccaatttcaagcaattcgcaaacacaacccttttcctgttctccttgaattgttcagcaattgaagggaacaacacagtcttca |
4016681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 4216876 - 4216939
Alignment:
| Q |
62 |
tgtcctgtactcgaaccactctggaacactacttccaggatacaaatacactgcttgataagaa |
125 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||||||||||| ||| | |||| ||||||||||||| |
|
|
| T |
4216876 |
tgtcttgtactccaaccactatggaacactacttccagaataaacatacggtgcttgataagaa |
4216939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 282
Target Start/End: Original strand, 3999089 - 3999181
Alignment:
| Q |
190 |
aatgtcgatatgcaaacttcatcaaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaact |
282 |
Q |
| |
|
||||| ||||||||||||| || | |||||| || | ||||||| ||| ||||||| |||| | || ||||| |||||| |||||||| |||| |
|
|
| T |
3999089 |
aatgttgatatgcaaactttattatattgatttgaatattcaactcaacatttatgtgagaacgtttatccaggttcaaacaattccataact |
3999181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 254 - 385
Target Start/End: Original strand, 13396086 - 13396220
Alignment:
| Q |
254 |
ttcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgttgagcaac---agaagggaaaaatacagtcttcaatgattca |
350 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | ||| |||||||| | ||||| ||||| ||| | | |
|
|
| T |
13396086 |
ttcatccaagttcaagcaattccaaaactctatccttttcttgttttccttgaattgttcggtaacttttgaagggaacactacagacttcagtgactta |
13396185 |
T |
|
| Q |
351 |
cattcaacaagtagagtttcaactgatgaaggaag |
385 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||| |
|
|
| T |
13396186 |
cattcaacaattagagtttcaagtgatgaaggaag |
13396220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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