View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11124_low_1 (Length: 493)
Name: NF11124_low_1
Description: NF11124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11124_low_1 |
 | |
|
| [»] scaffold0102 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 4696749 - 4696990
Alignment:
| Q |
15 |
cagagaagaaagagaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4696749 |
cagagaagaaagagaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctat |
4696848 |
T |
|
| Q |
115 |
gtctaactaacttctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4696849 |
gtctaactaacttctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaataaggtaatttccacattaagcaaactaagaattctagctg |
4696948 |
T |
|
| Q |
215 |
ctatttacgtgctatcttatttctcaacatcttcttctaata |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4696949 |
ctatttacgtgctatcttatttctcaacatcttcttctaata |
4696990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 4674491 - 4674659
Alignment:
| Q |
15 |
cagagaagaaagagaaaaa-tgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagcta |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4674491 |
cagagaagaaagagaaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatga------atgtagaagttggttatgacagcta |
4674584 |
T |
|
| Q |
114 |
tgtctaactaacttctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccac |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4674585 |
tgtctaactaacttctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaataaggtaatttccac |
4674659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 23415082 - 23415324
Alignment:
| Q |
15 |
cagagaagaaagagaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23415082 |
cagagaagaaagagaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatatagaagttggttatgacagctat |
23415181 |
T |
|
| Q |
115 |
gtctaactaacttctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctg |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415182 |
gtctacctaacttctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctg |
23415281 |
T |
|
| Q |
215 |
ctatttacgtgctatcttatttctcaacatcttcttctaatac |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415282 |
ctatttacgtgctatcttatttctcaacatcttcttctaatac |
23415324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 23419873 - 23420113
Alignment:
| Q |
15 |
cagagaagaaagagaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctat |
114 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23419873 |
cagagaagaaaga--aaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatatagaagttggttatgacagctat |
23419970 |
T |
|
| Q |
115 |
gtctaactaacttctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctg |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23419971 |
gtctacctaacttctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctg |
23420070 |
T |
|
| Q |
215 |
ctatttacgtgctatcttatttctcaacatcttcttctaatac |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23420071 |
ctatttacgtgctatcttatttctcaacatcttcttctaatac |
23420113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 253 - 475
Target Start/End: Original strand, 37656024 - 37656246
Alignment:
| Q |
253 |
aatactttgttttgaaattaaactgtaaattaaatataaagataaggtggttagaatcaaatggtaatttacgagtatagaagttctaatttcataacta |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37656024 |
aatactttgttttgaaattaaactgtaaattaaatgtaaagataaggtggttagaatcaaatggtaatttacgagtatagaagttctaatttcataacta |
37656123 |
T |
|
| Q |
353 |
ggtgaagatcatggannnnnnnnatttatataacattacattttaggtaaattgaaatgtcacagaatcaacccaacttagagcaaatatactatatgac |
452 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37656124 |
ggtgaagatcatggattttttttatttatataacagtacattttaggtaaattgaaatgtcacagaatcaacccaacttagagcaaatatactatatgac |
37656223 |
T |
|
| Q |
453 |
gttggacaaaagaatgagtttag |
475 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37656224 |
gttggacaaaagaatgagtttag |
37656246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 6944 - 6702
Alignment:
| Q |
15 |
cagagaagaaagagaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6944 |
cagagaagaaagagaaaaatgaagtgaaaaagattattgattgattcaactgaattctgttacaatgagggtatatatagaagttggttatgacagctat |
6845 |
T |
|
| Q |
115 |
gtctaactaacttctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctg |
214 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
6844 |
gtctaactaacttctgtctatctaaatgtaaatgaaatacaaatgaaattacatgtaaatgaggtaacttccacattcagcaaactaagaattctagctg |
6745 |
T |
|
| Q |
215 |
ctatttacgtgctatcttatttctcaacatcttcttctaatac |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6744 |
ctatttacgtgctatcttatttctcaacatcttcttctaatac |
6702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 2413 - 2349
Alignment:
| Q |
193 |
agcaaactaagaattctagctgctatttacgtgctatcttatttctcaacatcttcttctaatac |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2413 |
agcaaactaagaattctagctgctatttacgtgctatcttatttctcaacatcttcttctaatac |
2349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 14326024 - 14325812
Alignment:
| Q |
20 |
aagaaagagaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtcta |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||| | ||| |||||| ||||||||||||||||| |||||||||||||| ||| ||| || || |
|
|
| T |
14326024 |
aagaaagagaaaaatgaagtgaaattgattat-gattgaattaaccaaattcttttacaatgagggtatatatagaagttggttataacaactaagtata |
14325926 |
T |
|
| Q |
120 |
actaacttctatctatctaaatgtaaaagaaatacaaatgaaattacatgt-aaatgaggtaatttccacattaagcaaactaagaattctagctgctat |
218 |
Q |
| |
|
||||||||||||||| | ||||| || |||| ||||||||||||||||| ||||||| ||| || ||| ||||||||||||||| |||| |||||| |
|
|
| T |
14325925 |
actaacttctatctaaccaaatgaaactaaaatgcaaatgaaattacatgtaaaatgagataacttgcacgctaagcaaactaagaaccctagatgctat |
14325826 |
T |
|
| Q |
219 |
ttacgtgctatctt |
232 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
14325825 |
ttacgtgttatctt |
14325812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 14419034 - 14418822
Alignment:
| Q |
20 |
aagaaagagaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtcta |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||| | ||| |||||| ||||||||||||||||| |||||||||||||| ||| ||| || || |
|
|
| T |
14419034 |
aagaaagagaaaaatgaagtgaaattgattat-gattgaattaaccaaattcttttacaatgagggtatatatagaagttggttataacaactaagtata |
14418936 |
T |
|
| Q |
120 |
actaacttctatctatctaaatgtaaaagaaatacaaatgaaattacatgt-aaatgaggtaatttccacattaagcaaactaagaattctagctgctat |
218 |
Q |
| |
|
||||||||||||||| | ||||| || |||| ||||||||||||||||| ||||||| ||| || ||| ||||||||||||||| |||| |||||| |
|
|
| T |
14418935 |
actaacttctatctaaccaaatgaaactaaaatgcaaatgaaattacatgtaaaatgagataacttgcacgctaagcaaactaagaaccctagatgctat |
14418836 |
T |
|
| Q |
219 |
ttacgtgctatctt |
232 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
14418835 |
ttacgtgttatctt |
14418822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University