View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11124_low_2 (Length: 460)
Name: NF11124_low_2
Description: NF11124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11124_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 7e-90; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 282 - 457
Target Start/End: Original strand, 8067523 - 8067698
Alignment:
| Q |
282 |
ttcaagtctctctcttattttctatcgaagcgaccgatcatgtgtgtgctctcaattctttttgtttgtacgagagaacctaacagagatatcaaatcgg |
381 |
Q |
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| T |
8067523 |
ttcaagtctctctcttattttctatcgaagcgaccgatcatgtgtgtgctctcaattctttttgtttgtacgagagaacctaacagagatatcaaatcgg |
8067622 |
T |
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| Q |
382 |
acaaagaccaacacaatatcataaccgttgttcatgacttctctgttcatgtttctagcgagttctctgcttctcc |
457 |
Q |
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| T |
8067623 |
acaaagaccaacacaatatcataaccgttgttcatgacttctctgttcatgtttctagcgagttcttggcttctcc |
8067698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 8061580 - 8061726
Alignment:
| Q |
1 |
tttcctaaatgtactatccacataaaagaaagcaagaaatagcttaaagttaagataatggcttagtttagtttgaatcacaaaaatgattctattatga |
100 |
Q |
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| T |
8061580 |
tttcctaaatgtactatccacataaaagaaagcaagaaatagcttaaagttaagataatggcttagtttagtttgaatcacaaaaatgattctattatga |
8061679 |
T |
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| Q |
101 |
agcttaacattcaatgatacttatatttgacattatctgcccttata |
147 |
Q |
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| T |
8061680 |
agcatatcattcaatgatgcttatatttgacattatctgcccttata |
8061726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 8061760 - 8061852
Alignment:
| Q |
181 |
ataatggaagttgggaatttcatttgacattatgtgactttcataagacactagttttggacagacatgtttaaaaaataattggcataaact |
273 |
Q |
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| T |
8061760 |
ataatggaatttgggaatttcatttgacattatgtgactttcataagacactagttttggacagacatgtttaaaaaataattggcataaact |
8061852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 7930892 - 7930820
Alignment:
| Q |
15 |
tatccacataaaagaaagcaagaaatagcttaaagttaagataatggcttagtttagttt-gaatcacaaaaa |
86 |
Q |
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| T |
7930892 |
tatccacataaaagaaaagaagaaatggcttaaagttaagattatggcttagtttagtttagaatcacaaaaa |
7930820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 47140061 - 47140115
Alignment:
| Q |
312 |
cgaccgatcatgtgtgtg---ctctcaattctttttgtttgtacgagagaaccta |
363 |
Q |
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| T |
47140061 |
cgactgatcatgtgtgtgtgactctcaattcttcttgtttgtgcgagagaaccta |
47140115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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