View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11124_low_3 (Length: 204)
Name: NF11124_low_3
Description: NF11124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11124_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 38874045 - 38873885
Alignment:
| Q |
24 |
gtgagaaggaacagcagaaaaaagaaccagtggtggtaaaaagagaagaacaagaaactcaactggcattagtggtacttaactcagattcaaaatataa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38874045 |
gtgagaaggaacagcagaaaaaagaaccagtggtggtaaaaagagaagaacaagaaactcaactggcattagtggtacttaactcagattcaaaaaataa |
38873946 |
T |
|
| Q |
124 |
ggagagaattaatgtggttggtagttcgatcatcggcggttcaaccaagagaacccgcctttt |
186 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38873945 |
g--gagaattaatgtggttggtagttcgatcatcggcggttcaaccaagagaacccgcctttt |
38873885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 38776728 - 38776890
Alignment:
| Q |
25 |
tgagaaggaacagcagaaaaaagaaccagtggtggtaaaaagagaagaacaagaaactcaactggcattagtggtacttaactcagattcaaaatataag |
124 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
38776728 |
tgagaaggaacaacagaaaaaagaaccagtggtggtaaaaacagaagaacaggaaactcaactggcattagtggtacttaagtcagattcaaaaaataag |
38776827 |
T |
|
| Q |
125 |
gagagaattaatgtggt---tggtagttcgatcatcggcggttcaaccaagagaacccgcctttt |
186 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38776828 |
--gagaattaacgtggttggtggtagttcgatcataggcggttcaaccaagagaacccgcctttt |
38776890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University