View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11125_high_11 (Length: 557)
Name: NF11125_high_11
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 11544927 - 11544387
Alignment:
| Q |
1 |
gagtatattttttcgtaatcttgattaattcagagacta----gataacgtttgacatattcaaggaccaaagctacagtatactctcaattataaagca |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11544927 |
gagtatattttttcgtaatcttgattaattcagagactatatagataacgtttgacatattcaaggaccaaagctacagtttactctcaattataaagca |
11544828 |
T |
|
| Q |
97 |
taagatgttacctgtgatcgctttgtaggatctttgaggaattcaaaaactttttgagcaggcagagggagccaaagggtggtagcagcagtaacaatag |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11544827 |
aaagatgttacctgtgatcgctttgtaggatctttgaggaattcaaaaactttcagagcaggcagagggagccaaagggtggtagccgcagtaacaatag |
11544728 |
T |
|
| Q |
197 |
tgccatttggctggcttgtatcatcgtccatggtgctgcgaaaagagactctaacaccaccaatgctagcaagagttaaatggttcaatttcaattgacc |
296 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11544727 |
tgccatttggctggcttgtatcatcgtccgtggtgctgcgaaaagagactctaataccaccaatgctagcaagagttaaatggttcaattccaattgacc |
11544628 |
T |
|
| Q |
297 |
aggcattgttaaactttcacaaaacattttgaccattctctgagcaagctttatcacactattcctcccttcaagtgtttggatcactgaacaataatta |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544627 |
aggcattgttaaactttcacaaaacattttgaccattctctgagcaagctttatcacactattcctcccttcaagtgtttggatcactgaacaataatta |
11544528 |
T |
|
| Q |
397 |
gcaatacaatattaattattttagctaaatataaaatttacaaggaaaatagatgaatagagatttttggaagggtaaatttagaaaacaaagtgtgatt |
496 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544527 |
gcaatacaatattaattattttagataaatataaaatttacaaggaaaatagatgaatagagatttttggaagggtaaatttagaaaacaaagtgtgatt |
11544428 |
T |
|
| Q |
497 |
aacctcctatagtttcttcaacaggtattgcttcaacataa |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544427 |
aacctcctatagtttcttcaacaggtattgcttcaacataa |
11544387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 38 - 535
Target Start/End: Complemental strand, 11558302 - 11557810
Alignment:
| Q |
38 |
tagataacgtttgacatattcaaggaccaaagctacagtatactctcaattataaagcataagatgttacctgtgatcgctttgtaggatctttgaggaa |
137 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | ||| | |||||||||||||||| || | |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11558302 |
tagataacgtttgacatatccaaggaccaaaaccacaatttactctcaattataaaacaaagcatgttacctgtgatcgttttgtaggatctttgaggaa |
11558203 |
T |
|
| Q |
138 |
ttcaaaaactttttgagcaggcagagggagccaaagggtggtagcagcagtaacaatagtgccatttggctggcttgtatcatcgtccatggtgctgcga |
237 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |||| |
|
|
| T |
11558202 |
ttcaaaaactttctgagcaggcagagggagccaaagggtggtagcagcagtaacaacagtgccatttggctggcttgcatcatcgtcggtggttgcgcga |
11558103 |
T |
|
| Q |
238 |
aaagagactctaacaccaccaatgctagcaagagttaaatggttcaatttcaattgaccaggcattgttaaactttcacaaaacattttgaccattctct |
337 |
Q |
| |
|
| |||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||||||||||||| | |||||||||||| || |||||||| | |
|
|
| T |
11558102 |
atagagactctaaccccaccaatgctatcaagagttaaatggttcaattccacttgaccaggcattgttaagcattcacaaaacatcttcaccattctat |
11558003 |
T |
|
| Q |
338 |
gagcaagctttatcacactattcctcccttcaagtgtttggatcactgaacaataattagcaatacaatattaattattttagctaaatataaaatttac |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
11558002 |
cagcaagctttatcacactattcctcccttcaagtgtttggatcactgaacaataattagcaatataatattaattaaattcgctaaatataaaatttac |
11557903 |
T |
|
| Q |
438 |
aaggaaaatagatgaatagagatttttggaagggtaaatttagaaaacaaagtgtgattaacctcctatagtttcttcaacaggtattgcttcaacat |
535 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11557902 |
aaggaaaatagatgaatagagatatttggaagggtaaatttagaagacaa-----gattaacctcctatagtttcttcaacaggtattgcttcaacat |
11557810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 108 - 382
Target Start/End: Original strand, 12064193 - 12064468
Alignment:
| Q |
108 |
ctgtgatcgctttgtaggatctttgaggaattcaaaaactttttgagcaggcagagggagccaaagggtggtagcagcagtaacaatagtgccatttggc |
207 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
12064193 |
ctgtgatcgttttgtaggatctttgagcaattcaaaaactttctgagcaggcagagggagccaaagagtggtagcagcagttacaacagtgccatttggc |
12064292 |
T |
|
| Q |
208 |
tggcttgtatcatcgtccatggtgctgcgaaaagagactctaa-caccaccaatgctagcaagagttaaatggttcaatttcaattgaccaggcattgtt |
306 |
Q |
| |
|
||||||||||||| ||| |||| ||||| ||||||||||| | |||||||||||| ||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
12064293 |
tggcttgtatcattgtcggtggtatcgcgaagagagactctaaaccccaccaatgctatcaagagttaaatggttcaattccacttgaccaggcattgtt |
12064392 |
T |
|
| Q |
307 |
aaactttcacaaaacattttgaccattctctgagcaagctttatcacactattcctcccttcaagtgtttggatca |
382 |
Q |
| |
|
|| | |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12064393 |
aagcattcacaaaacattttgaccattctatcagcaagctttatcacactattcctcccttcaagtgtttggatca |
12064468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University