View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_high_13 (Length: 493)
Name: NF11125_high_13
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 29883674 - 29883967
Alignment:
| Q |
20 |
tgaatttctattgtcttcccccacaagtaacatgtatttgctaccccctcggtcttcggataatactttactctcaccaagcattttttcttcacctcca |
119 |
Q |
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| T |
29883674 |
tgaatttctattgtcttcccccacaagtaacatgtatttgctaccccctcggtcttcggataatactttactctcaccaagcattttttcttcacctcca |
29883773 |
T |
|
| Q |
120 |
tctcttgaataccatttctatccacatctacaaaatgggatttcaagctctggtcctccgtctccactttctgcagacttttttccttccttcgcaagtc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29883774 |
tctcttgaataccatttctatccacatctacaaaatgggatttcatgctctggtcctccgtctccactttctgcaggcttttttccttccttcgcaagtc |
29883873 |
T |
|
| Q |
220 |
ctaagaggccagacgatcaatattattcttgtgctttgttgagggtgcttcctgataaccgaattgattttaattcagagtcttacaagagttg |
313 |
Q |
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| T |
29883874 |
ctaagaggtcagacgatcaatagcattcttgtgctttgtcgagggtgcttcctgataaccgaattgattttaattcagagtcttacaagagttg |
29883967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 93 - 313
Target Start/End: Complemental strand, 29880111 - 29879891
Alignment:
| Q |
93 |
tcaccaagcattttttcttcacctccatctcttgaataccatttctatccacatctacaaaatgggatttcaagctctggtcctccgtctccactttctg |
192 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
29880111 |
tcaccaagcattttttcttcatttccatctcttgaataccctttctatccacatctaccaaacatgatttcaagctctggtcctccgtctccactttctg |
29880012 |
T |
|
| Q |
193 |
cagacttttttccttccttcgcaagtcctaagaggccagacgatcaatattattcttgtgctttgttgagggtgcttcctgataaccgaattgattttaa |
292 |
Q |
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| T |
29880011 |
caggcatttttccttcctttgcaagtcctaaagggccagacaatcaatagccttctcgtgttttgttgagtgtgctcccttataaccgagttgattttaa |
29879912 |
T |
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| Q |
293 |
ttcagagtcttacaagagttg |
313 |
Q |
| |
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||||||||||||||||||||| |
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| T |
29879911 |
ttcagagtcttacaagagttg |
29879891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 412 - 483
Target Start/End: Original strand, 29884100 - 29884171
Alignment:
| Q |
412 |
atcttatttggttaatgatttttcaatgtaagacattatgtacttcttcaatacttagattcctatttcatc |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29884100 |
atcttatttggttaatgatttttcaatgtaagacattatgtacttcttcaatacttagattcctatttcatc |
29884171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 427
Target Start/End: Original strand, 29884032 - 29884081
Alignment:
| Q |
378 |
ctttactatacatgtcatatatttttaagtatagatcttatttggttaat |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29884032 |
ctttactatacatgtcatatatttttaagtatagatcttatttggttaat |
29884081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 17676068 - 17675967
Alignment:
| Q |
126 |
gaataccatttctatccacatctacaaaatgggatttcaagctctggtcctccgtctccactttctgcagacttttttccttccttcgcaagtcctaaga |
225 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||| | | ||||||||||||||||||| || | | |||||||| || |||||||||||| |
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| T |
17676068 |
gaataccctttctatccacatctacaaaatgggattttaagtccggatcctccgtctccactttcttcaagcatatttccttcttttacaagtcctaaga |
17675969 |
T |
|
| Q |
226 |
gg |
227 |
Q |
| |
|
|| |
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|
| T |
17675968 |
gg |
17675967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 17646156 - 17646242
Alignment:
| Q |
394 |
atatatttttaagtatagatcttatttggttaatgatttttcaatgtaagacattatgtacttcttcaatacttagattcctatttc |
480 |
Q |
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|
|||||||||||| ||| |||||||||||| | |||||||||||| |||| |||||| |||||||||| | ||| |||||| |||| |
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| T |
17646156 |
atatatttttaaatattgatcttatttggcaagtgatttttcaataaaagatattatggacttcttcaacatttatattcctttttc |
17646242 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 17650295 - 17650377
Alignment:
| Q |
145 |
atctacaaaatgggatttcaagctctggtcctccgtctccactttctgcagacttttttccttccttcgcaagtcctaagagg |
227 |
Q |
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|||||||||||||||||| || | | | ||||||||||||||||||| ||| | |||||||| || |||||||||||||| |
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| T |
17650295 |
atctacaaaatgggattttaatcccggatcctccgtctccactttcttcaggtatatttccttcttttacaagtcctaagagg |
17650377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 17663761 - 17663673
Alignment:
| Q |
138 |
tatccacatctacaaaatgggatttcaagctctgg-tcctccgtctccactttctgcagacttttttccttccttcgcaagtcctaagagg |
227 |
Q |
| |
|
|||||||||||||||| ||| |||| |||| |||| ||||||||||||||||||| ||| | |||||||||| || ||||| |||||||| |
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| T |
17663761 |
tatccacatctacaaagtgg-attttaagc-ctggatcctccgtctccactttcttcaggcatttttccttcttttacaagtactaagagg |
17663673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 241
Target Start/End: Original strand, 32670287 - 32670435
Alignment:
| Q |
93 |
tcaccaagcattttttcttcacctccatctcttgaataccatttctatccacatctacaaaatgggatttcaagctctggtcctccgtctccactttctg |
192 |
Q |
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||||||| ||| |||||||| ||| |||| || |||| || ||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||| || |
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| T |
32670287 |
tcaccaaacatgttttcttcgccttcatcactcgaatgccctttctatccacatctacaaaatgtgattttaagccctgatcctccgtctccactttttg |
32670386 |
T |
|
| Q |
193 |
cagacttttttccttccttcgcaagtcctaagaggccagacgatcaata |
241 |
Q |
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| |||||||| | ||| | ||||||||||||||||| ||||||| |
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| T |
32670387 |
ttggactttttcctcctttcaccagtcctaagaggccagataatcaata |
32670435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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