View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11125_high_15 (Length: 433)
Name: NF11125_high_15
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 34145101 - 34145504
Alignment:
| Q |
19 |
aaaggcgagaacagattcaacgacctgaggaccgaggtatttggccagttcgttcttcacactcttgagctccgtttgagcttcattcaacctactttga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34145101 |
aaaggcgagaacagattcaacgacctgaggaccgaggtatttggccagttcgttcttcacactcttgagctccgtttgagcttcattcaacctaccttga |
34145200 |
T |
|
| Q |
119 |
aggtcatttgctggacccgcacaaccatggatagggtccctcaaccaggcatcagcctcatacaccaaggattcaacagcttgttcatgatgtgaaacat |
218 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34145201 |
aggtcatttgctggacccgcacagccatggatagggtccctcaaccaggcatcagcttcatacaccaaggattcaacagcttgttcatgatgtgaaacat |
34145300 |
T |
|
| Q |
219 |
ctagttttttcaacagattagtcacatttctcttcccaaacaccgagtgtaccttgatgaaacgctccgggttgtcctttggaaagtaaggagctaagac |
318 |
Q |
| |
|
| | |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34145301 |
ccaattttttcaacagattagtcacatttctcattccaaacaccgagtgtaccttgatgaaacgctccgggttgtcctttggaaagtaaggagctaagac |
34145400 |
T |
|
| Q |
319 |
acaggtagggtggcacttcctatgaagatgcttgcaagctgcacatgggcgaataatctctctatccataactgcacattaaattagcaaattcaattat |
418 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34145401 |
acaggtaaggtggcacttcctatggagatgcttgcaagctgcacatgggcgaataatctctctatccattgctgcacattaaattagcaaattcaattat |
34145500 |
T |
|
| Q |
419 |
tcat |
422 |
Q |
| |
|
|||| |
|
|
| T |
34145501 |
tcat |
34145504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 34155441 - 34155842
Alignment:
| Q |
19 |
aaaggcgagaacagattcaacgacctgaggaccgaggtatttggccagttcgttcttcacactcttgagctccgtttgagcttcattcaacctactttga |
118 |
Q |
| |
|
|||| |||||||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||| || ||| ||||| ||||||||||||||| |||| |
|
|
| T |
34155441 |
aaagccgagaacaaattcaacaatctgaggattgaggtatttggccagttcgttcttcacactctttagttccatttgaacttcattcaacctacgttga |
34155540 |
T |
|
| Q |
119 |
aggtcatttgctggacccgcacaaccatggatagggtccctcaaccaggcatcagcctcatacaccaaggattcaacagcttgttcatgatgtgaaacat |
218 |
Q |
| |
|
||||| |||||||||||||||||||||| || ||||||||||||| ||| |||||||||||||| || ||||||| ||||||||| ||||||||| ||| |
|
|
| T |
34155541 |
aggtcctttgctggacccgcacaaccatagactgggtccctcaacctggcctcagcctcatacacgaatgattcaatagcttgttcgtgatgtgaagcat |
34155640 |
T |
|
| Q |
219 |
ctagttttttcaacagattagtcacatttctcttcccaaacaccgagtgtaccttgatgaaacgctccgggttgtcctttggaaagtaaggagctaagac |
318 |
Q |
| |
|
| | ||||||||||| ||| | |||||| |||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| | | | |
|
|
| T |
34155641 |
caacttttttcaacatattcgacacattgttctttccaaacacagagtgtaccttgatgaaacgctctgggttgtcaggtggaaagtaaggagcaaggtc |
34155740 |
T |
|
| Q |
319 |
acaggtagggtggcacttcctatgaagatgcttgcaagctgcacatgggcgaataatctctctatcc---ataactgcacattaaattagcaaattcaat |
415 |
Q |
| |
|
|||| | | || ||||| | | | ||||||||||| ||||| || ||||||||||||||||| || || |||||||||||||||| |||||||||| |
|
|
| T |
34155741 |
acagcttgagtcgcactcctgacggagatgcttgcatgctgcgcacgggcgaataatctctcttgccattattactgcacattaaattaacaaattcaat |
34155840 |
T |
|
| Q |
416 |
ta |
417 |
Q |
| |
|
|| |
|
|
| T |
34155841 |
ta |
34155842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 417
Target Start/End: Original strand, 34140881 - 34140954
Alignment:
| Q |
344 |
agatgcttgcaagctgcacatgggcgaataatctctctatccataactgcacattaaattagcaaattcaatta |
417 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||| ||||||||||| |
|
|
| T |
34140881 |
agatgcttgcacactgcacacaggcgaataatctcttttgccataactgcacattaaattaggaaattcaatta |
34140954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 417
Target Start/End: Original strand, 34134509 - 34134582
Alignment:
| Q |
345 |
gatgcttgcaagctgcacatgggcgaataatctctctatccataactgcacattaaat-tagcaaattcaatta |
417 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||| ||||||||| | ||||||| || |||||||||||| |
|
|
| T |
34134509 |
gatgcttgcacgctgcacacgggcgaataatctcttctgccataactgtaaattaaatataacaaattcaatta |
34134582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University