View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_high_18 (Length: 405)
Name: NF11125_high_18
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 183 - 396
Target Start/End: Complemental strand, 35451434 - 35451221
Alignment:
| Q |
183 |
gagcagagacaaattcataagtagacttagccgtgaacttttcttcagactcaagaacccatctccacatatcttcctaatccatcagtgacattgtgcc |
282 |
Q |
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| T |
35451434 |
gagcagagacaaattcataagtagacttagccgtgaacttttcttcagactcaagaacccatctccacatatcttcctaatccatcagtgacattgtgcc |
35451335 |
T |
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| Q |
283 |
taactgcaccatgtggttattgagcatctcttcctcccaaacaaacagccgcctgagccaaagaaacacccatcgccatcctccctcttccgaaactccc |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35451334 |
taactgcaccatgtggttattgagcatctcttcctcccaaacaaacagccgcctgagccaaagaaacacccatcgccatcctccctcttccgaaactccc |
35451235 |
T |
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| Q |
383 |
atatctgtgctgct |
396 |
Q |
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||||||||| |||| |
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| T |
35451234 |
atatctgtgatgct |
35451221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 11545121 - 11544960
Alignment:
| Q |
20 |
atcaattaaattagagtcattcaaagaaaattatagagtaaacaatcatttggtctctaaatgtatcaaaactatagaagcatgcatcttttatctgaaa |
119 |
Q |
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| T |
11545121 |
atcaattaaattagagtcattcaaataaaattatagagtaaacaatcatttggtctctaaatgtatcaaaactatagaagcatgcatcttttatctgaaa |
11545022 |
T |
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| Q |
120 |
attttgaaaaatgaaacacacattcaaagaagaaactacctaaccaaaaacatatttgagga |
181 |
Q |
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| T |
11545021 |
attttgtaaaatgaaacacacattcaaagaagaaactacctaaccaaaaacatatttgagga |
11544960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 11558425 - 11558372
Alignment:
| Q |
128 |
aaatgaaacacacattcaaagaagaaactacctaaccaaaaacatatttgagga |
181 |
Q |
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|||||||||||||||||| |||| |||| | ||||||||||||||||||||||| |
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| T |
11558425 |
aaatgaaacacacattcagagaacaaacgagctaaccaaaaacatatttgagga |
11558372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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