View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11125_high_20 (Length: 373)

Name: NF11125_high_20
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11125_high_20
NF11125_high_20
[»] chr6 (2 HSPs)
chr6 (154-363)||(4915406-4915615)
chr6 (19-145)||(28889748-28889874)
[»] chr7 (2 HSPs)
chr7 (1-153)||(13077531-13077683)
chr7 (1-150)||(13078592-13078741)
[»] chr4 (2 HSPs)
chr4 (1-153)||(54938826-54938978)
chr4 (30-150)||(54937788-54937908)
[»] chr3 (5 HSPs)
chr3 (1-153)||(39984801-39984953)
chr3 (1-151)||(39983742-39983892)
chr3 (1-150)||(41968188-41968336)
chr3 (156-311)||(1505710-1505865)
chr3 (40-146)||(14414236-14414340)
[»] chr2 (9 HSPs)
chr2 (1-153)||(14684557-14684709)
chr2 (1-153)||(21306413-21306565)
chr2 (1-150)||(14685618-14685767)
chr2 (1-150)||(30246459-30246608)
chr2 (1-153)||(40421381-40421533)
chr2 (1-150)||(4517243-4517392)
chr2 (1-150)||(21307470-21307619)
chr2 (1-150)||(40422440-40422589)
chr2 (154-363)||(28025714-28025926)
[»] chr1 (4 HSPs)
chr1 (1-153)||(8090038-8090190)
chr1 (1-150)||(27962617-27962766)
chr1 (1-150)||(48907301-48907450)
chr1 (1-133)||(172877-173009)
[»] chr8 (8 HSPs)
chr8 (1-150)||(45036163-45036312)
chr8 (1-150)||(6540576-6540727)
chr8 (1-150)||(13255566-13255714)
chr8 (154-363)||(3011340-3011552)
chr8 (154-301)||(2921867-2922014)
chr8 (156-363)||(2931217-2931424)
chr8 (154-255)||(2947868-2947969)
chr8 (154-311)||(37796716-37796873)
[»] chr5 (1 HSPs)
chr5 (22-127)||(5033188-5033290)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 154 - 363
Target Start/End: Complemental strand, 4915615 - 4915406
Alignment:
Q  154 tcactccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttg 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4915615 tcactccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaaccactttg 4915516  T
Q  254 cagaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatccacatgtaactttaagccatctgccttcttttaggcctttcaag 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4915515 cagaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatccacatgtaactttaagccatctgccttcttttaggcctttcaag 4915416  T
Q  354 aacatctctg 363  Q
    ||||||||||    
T  4915415 aacatctctg 4915406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 28889874 - 28889748
Alignment:
Q  19 catctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaatcaaagggattttcccta 118  Q
    |||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  28889874 catctgaggatttgactgggaaggggtcattttggcattagggagttgcagaccctcaaagttctgcgatattattctgtaatcaaatggattttcccta 28889775  T
Q  119 ttttattcttctatatcagttggtttc 145  Q
    ||| |||||||||||||||||||||||    
T  28889774 tttcattcttctatatcagttggtttc 28889748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 13077531 - 13077683
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13077531 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 13077630  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatcaact 153  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13077631 tcaaagggattttccctattttattcttctatatcagttgatttctatcaact 13077683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 13078592 - 13078741
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13078592 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattccgtaa 13078691  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatca 150  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13078692 tcaaagggattttccctattttattcttctatatcagttgatttctatca 13078741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 54938978 - 54938826
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  54938978 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattcagtaa 54938879  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatcaact 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54938878 tcaaagggattttccctattttattcttctatatcagttggtttctatcaact 54938826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 54937908 - 54937788
Alignment:
Q  30 ttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttc 129  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54937908 ttgactgggaaggggccattttagcaatagggaggtgcagaccctcgaagttctgcaatattattcagtaatcaaagggattttccctattttattcttc 54937809  T
Q  130 tatatcagttggtttctatca 150  Q
    |||||||||||||||||||||    
T  54937808 tatatcagttggtttctatca 54937788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 39984953 - 39984801
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39984953 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 39984854  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatcaact 153  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39984853 tcaaagggattttccctattttattcttctatatcagttgatttctatcaact 39984801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 39983892 - 39983742
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39983892 gatgggaagattgaggggcatctgaggatttgactgggaaggggccatttaggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 39983793  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatcaa 151  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39983792 tcaaagggattttccctattttattcttctatatcagttgatttctatcaa 39983742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 41968336 - 41968188
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41968336 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatatta-tctgtaa 41968238  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatca 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41968237 tcaaagggattttccctattttattcttctatatcagttggtttctatca 41968188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 156 - 311
Target Start/End: Complemental strand, 1505865 - 1505710
Alignment:
Q  156 actccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttgca 255  Q
    ||||| ||| |||||||||| ||| |||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||    
T  1505865 actccgactattttcaactcttctgtgtactcatttattctattcccgtagaagctctcgtcaatcaggggaatgtcaacaagaaatgaaccactttgca 1505766  T
Q  256 gaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatcca 311  Q
     || |||   |||  |||| ||||||||||||||||| || |||||  ||||||||    
T  1505765 aaattttccgcaatgatgagccaattaagaatgactttgagggaggcatgtatcca 1505710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 14414236 - 14414340
Alignment:
Q  40 aggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattttattcttctatatcagtt 139  Q
    |||||||||||||| | |||||| ||||||||||| |||||||||| |||| ||||||||| ||||  ||||| ||||||||  ||||||||||||||||    
T  14414236 aggggccattttgggattagggacgtgcagaccctagaagttctgccatatcattctgtaaacaaa--gatttcccctatttccttcttctatatcagtt 14414333  T
Q  140 ggtttct 146  Q
    |||||||    
T  14414334 ggtttct 14414340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 14684557 - 14684709
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14684557 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 14684656  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatcaact 153  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14684657 tcaaagggattttccctattttattcttctatatcagttgatttctatcaact 14684709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 21306413 - 21306565
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21306413 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 21306512  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatcaact 153  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21306513 tcaaagggattttccctattttattcttctatatcagttgatttctatcaact 21306565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 14685618 - 14685767
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14685618 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 14685717  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatca 150  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14685718 tcaaagggattttccctattttattcttctatatcagttgatttctatca 14685767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 30246459 - 30246608
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30246459 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 30246558  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatca 150  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30246559 tcaaagggattttccctattttattcttctatatcagttgatttctatca 30246608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 40421381 - 40421533
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40421381 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattactctgtaa 40421480  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatcaact 153  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40421481 tcaaagggattttccctattttattcttctatatcagttgatttctatcaact 40421533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 4517392 - 4517243
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4517392 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgatgttctgcaatattattctgtaa 4517293  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatca 150  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4517292 tcaaagggattttccctattttattcttctatatcagttgatttctatca 4517243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 21307470 - 21307619
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21307470 gatgggaagattgaggggcatctgaggatttgactgggaaggggcctttttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 21307569  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatca 150  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21307570 tcaaagggattttccctattttattcttctatatcagttgatttctatca 21307619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 40422440 - 40422589
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40422440 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagacccttgaagttctgcaatattattctgtaa 40422539  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatca 150  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40422540 tcaaagggattttccctattttattcttctatatcagttgatttctatca 40422589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 154 - 363
Target Start/End: Original strand, 28025714 - 28025926
Alignment:
Q  154 tcactccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttg 253  Q
    ||||||| || ||||||||||| ||||  ||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||    
T  28025714 tcactcctacagttttcaactcttcttcatacttgtttattctatccccatagaagctctcgtcaatcagggggatatcaacaagaactgaaccactttg 28025813  T
Q  254 cagaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatccacat----gtaactttaagccatctgccttcttttaggccttt 349  Q
    || || |||| ||||    || | ||||||||| ||||| |||||||| ||||||||| ||    |||||||||||||| ||||| |||||||  | |||    
T  28025814 caaaaattttcccaatggcgagcgaattaagaacgactttgaaggaggcctgtatcca-atgacggtaactttaagccagctgccatcttttatacattt 28025912  T
Q  350 caagaacatctctg 363  Q
    ||| ||| ||||||    
T  28025913 caaaaacctctctg 28025926  T

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Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 8090190 - 8090038
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8090190 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 8090091  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatcaact 153  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8090090 tcaaagggattttccctattttattcttctatatcagttgatttctatcaact 8090038  T

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Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 27962766 - 27962617
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  27962766 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcattagggaggtgcagacccttgaagttctgcaatattattctgtaa 27962667  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatca 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27962666 tcaaagggattttccctattttattcttctatatcagttggtttctatca 27962617  T

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Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 48907450 - 48907301
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48907450 gatgggaagattgaggggcatctaaggatttgactgggaaggggccattttggtaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 48907351  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatca 150  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  48907350 tcaaagggattttccctattttattcttctatatcaattgatttctatca 48907301  T

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Target: chr1; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 173009 - 172877
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  173009 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 172910  T
Q  101 tcaaagggattttccctattttattcttctata 133  Q
    |||||||||||||||||||||||||||||||||    
T  172909 tcaaagggattttccctattttattcttctata 172877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 45036312 - 45036163
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45036312 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 45036213  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatca 150  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  45036212 tcaaaggaattttccctattttattcttctatatcagttgatttctatca 45036163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 6540727 - 6540576
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttg--gcaatagggaggtgcagaccctcgaagttctgcaatattattctgt 98  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||  ||| |||||||||||||||||| |||||||||||||||||||||||    
T  6540727 gatgggaagattgaggggcatctgaggacttgactgggaaggggccattttgtggcattagggaggtgcagacccttgaagttctgcaatattattctgt 6540628  T
Q  99 aatcaaagggattttccctattttattcttctatatcagttggtttctatca 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6540627 aatcaaagggattttccctattttattcttctatatcagttggtttctatca 6540576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 13255566 - 13255714
Alignment:
Q  1 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13255566 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagacccttgaagttctgcaatattattctgtaa 13255665  T
Q  101 tcaaagggattttccctattttattcttctatatcagttggtttctatca 150  Q
    ||||| ||| ||| || | |||||||||||||||||||||||||||||||    
T  13255666 tcaaa-ggaatttaccaaatttattcttctatatcagttggtttctatca 13255714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 154 - 363
Target Start/End: Complemental strand, 3011552 - 3011340
Alignment:
Q  154 tcactccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttg 253  Q
    ||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||    
T  3011552 tcactccaattgttttcaactcctctttgtattcatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagtactaaaccactttg 3011453  T
Q  254 cagaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatc---cacatgtaactttaagccatctgccttcttttaggcctttc 350  Q
    || ||||||| ||||  || | ||||||||||||||||| ||||||||  ||||||    || |||||||||||||||  ||||| |||||| || || |    
T  3011452 caaaagttttcccaatgataagccaattaagaatgactttgaaggaggcatgtatctattacctgtaactttaagccagttgcctccttttaagcattcc 3011353  T
Q  351 aagaacatctctg 363  Q
    |||||| ||||||    
T  3011352 aagaacttctctg 3011340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 301
Target Start/End: Original strand, 2921867 - 2922014
Alignment:
Q  154 tcactccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttg 253  Q
    ||||||||| |||||||||||||||||  |||||||||||| ||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||    
T  2921867 tcactccaattgttttcaactcctcttcatacttatttattttatccccgtagaagctctcatcaatcaggggaatatcgacaagaactgaaccactttg 2921966  T
Q  254 cagaagtttttccaaccatgaaccaattaagaatgacttcgaaggagg 301  Q
    || || |||  ||||   | | | ||||||||||||||| ||||||||    
T  2921967 caaaattttccccaatggttagcgaattaagaatgactttgaaggagg 2922014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 156 - 363
Target Start/End: Original strand, 2931217 - 2931424
Alignment:
Q  156 actccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttgca 255  Q
    ||||||| ||||||||| ||||||||||||| ||||||||| || ||||||||||| ||||| || | |||||| || |||||||||||||| |||||||    
T  2931217 actccaattgttttcaattcctctttgtactcatttattctctctccatagaagctttcatctattaagggaatatccacaagaactgaaccactttgca 2931316  T
Q  256 gaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatcc---acatgtaactttaagccatctgccttcttttaggcctttcaa 352  Q
     ||  ||| |||   |||||||||||||||||||||| |||||||   || ||||   ||  |||||||||||||| ||||||||||||| || |  |||    
T  2931317 aaatatttccca---atgaaccaattaagaatgactttgaaggagacatgaatccattacccgtaactttaagccagctgccttcttttatgcatgccaa 2931413  T
Q  353 gaacatctctg 363  Q
    |||| ||||||    
T  2931414 gaacctctctg 2931424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 154 - 255
Target Start/End: Original strand, 2947868 - 2947969
Alignment:
Q  154 tcactccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttg 253  Q
    ||||||||||| |||| ||||| |||||||||  ||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  2947868 tcactccaactctttttaactcttctttgtacgcatttattctttccccatagaagctctcatcaatcagggggatgtcaacaagatctgaaccactttg 2947967  T
Q  254 ca 255  Q
    ||    
T  2947968 ca 2947969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 154 - 311
Target Start/End: Original strand, 37796716 - 37796873
Alignment:
Q  154 tcactccaactgttttcaactcctctttgtacttatttattctatccccatagaagctctcatcaatcaggggaatgtcaacaagaactgaacccctttg 253  Q
    ||||||||| |||||||||||||||||  ||||| |||||||||||||||||||||||||||||||| ||||| || |||||||| || ||||| |||||    
T  37796716 tcactccaattgttttcaactcctcttcatacttgtttattctatccccatagaagctctcatcaatgagggggatatcaacaagcaccgaaccactttg 37796815  T
Q  254 cagaagtttttccaaccatgaaccaattaagaatgacttcgaaggaggtctgtatcca 311  Q
    || || |||  ||||    || | ||||||||| ||||| |||||||| |||||||||    
T  37796816 caaaattttccccaatggcgagcgaattaagaacgactttgaaggaggactgtatcca 37796873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 5033188 - 5033290
Alignment:
Q  22 ctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaatcaaagggattttccctattt 121  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||  || || ||||||||||||||||| |||||||||||    
T  5033188 ctgaggatttgactgggaaggggccattttggc-atagggaggtgcagagcctcaaagttctgtgatgtt-ttctgtaatcaaaggga-tttccctattt 5033284  T
Q  122 tattct 127  Q
    ||||||    
T  5033285 tattct 5033290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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