View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11125_high_24 (Length: 355)

Name: NF11125_high_24
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11125_high_24
NF11125_high_24
[»] chr3 (19 HSPs)
chr3 (15-355)||(22457098-22457438)
chr3 (15-355)||(22480079-22480419)
chr3 (19-154)||(22629232-22629367)
chr3 (27-270)||(22366597-22366840)
chr3 (27-148)||(22441540-22441661)
chr3 (27-148)||(22352605-22352726)
chr3 (36-148)||(22356785-22356897)
chr3 (19-207)||(22634194-22634382)
chr3 (27-149)||(22466742-22466864)
chr3 (37-148)||(22430008-22430119)
chr3 (27-91)||(37929608-37929672)
chr3 (27-132)||(22435442-22435547)
chr3 (322-355)||(22634046-22634079)
chr3 (231-283)||(22613937-22613989)
chr3 (247-292)||(22352488-22352533)
chr3 (322-355)||(22366509-22366542)
chr3 (322-355)||(22441330-22441363)
chr3 (322-355)||(22466545-22466578)
chr3 (247-291)||(22356627-22356671)


Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 355
Target Start/End: Complemental strand, 22457438 - 22457098
Alignment:
Q  15 atgaagtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22457438 atgaagtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagcggatacatgagtgctatatcttc 22457339  T
Q  115 ctcaatcaatgagatgcaaaaaatggagaaactacaaattcgcgcaaacggatatggcacagttattgacatgcatttgaattcaccaccacctatgctt 214  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22457338 ctcaatcaatgagatgcaaaaagtggagaaactacaaattcgcgcaaacggatatgacacagttattgacatgcatttgaattcaccaccacctatgctt 22457239  T
Q  215 cgacatcttactcttgatgggaagttagagatgttgcctgtgtggattccaaaacttcaaaatcttgttaagctgaaactcaagtattcccaactaacag 314  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22457238 cgacatcttactcttgatgggaagttagagatgttgcctctgtggattccaaaacttcaaaatcttgttaagctgaaactcaagtattcccaactaacag 22457139  T
Q  315 atgataaaatgaaattactcaaaagtatgccaaacttgttg 355  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22457138 atgataaaatgaaattactcaaaagtatgccaaacttgttg 22457098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 355
Target Start/End: Complemental strand, 22480419 - 22480079
Alignment:
Q  15 atgaagtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22480419 atgaagtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagcggatacatgagtgctatatcttc 22480320  T
Q  115 ctcaatcaatgagatgcaaaaaatggagaaactacaaattcgcgcaaacggatatggcacagttattgacatgcatttgaattcaccaccacctatgctt 214  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22480319 ctcaatcaatgagatgcaaaaagtggagaaactacaaattcgcgcaaacggatatgacacagttattgacatgcatttgaattcaccaccacctatgctt 22480220  T
Q  215 cgacatcttactcttgatgggaagttagagatgttgcctgtgtggattccaaaacttcaaaatcttgttaagctgaaactcaagtattcccaactaacag 314  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22480219 cgacatcttactcttgatgggaagttagagatgttgcctctgtggattccaaaacttcaaaatcttgttaagctgaaactcaagtattcccaactaacag 22480120  T
Q  315 atgataaaatgaaattactcaaaagtatgccaaacttgttg 355  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22480119 atgataaaatgaaattactcaaaagtatgccaaacttgttg 22480079  T

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Target: chr3; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 22629367 - 22629232
Alignment:
Q  19 agtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctca 118  Q
    ||||||| |||||||| |||| |||||||| ||||| || |||||||||||||||||| ||||||||||||||  ||| |||||||||||||||||||||    
T  22629367 agtggtagagctaatcgaagatctaggaaagctaaatcagctaagggaattggtcttgctcggtgttaggagtaaatatatgagtgctatatcttcctca 22629268  T
Q  119 atcaatgagatgcaaaaaatggagaaactacaaatt 154  Q
    |||||| |||||||| || |||||||||||||||||    
T  22629267 atcaataagatgcaacaattggagaaactacaaatt 22629232  T

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Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 270
Target Start/End: Complemental strand, 22366840 - 22366597
Alignment:
Q  27 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga 126  Q
    |||||||  |||||||||||||||||||||| ||||||||||||| ||||  |||||||||||||  ||| ||||||||||||||||| ||||||||| |    
T  22366840 agctaattgaagagctaggaaaactaaagcagctaagggaattgggcttggccggtgttaggagtaaatatatgagtgctatatcttcttcaatcaataa 22366741  T
Q  127 gatgcaaaaaatggagaaactacaaattcgcgcaaacggatatggcacagttattgacatgcatttgaattcaccaccacctatgcttcgacatcttact 226  Q
    ||||||| || ||||||||||| | ||| | | |  || |||||  ||| | |||||  || ||||||||||||| ||||||||||||| |||| ||       
T  22366740 gatgcaacaactggagaaactaaatattagtggagtcgaatatgagacattcattgatctggatttgaattcacccccacctatgcttcaacatattgga 22366641  T
Q  227 cttgatgggaagttagagatgttgcctgtgtggattccaaaact 270  Q
    ||  | ||||| ||| ||| ||| |||| |||||||||||||||    
T  22366640 ctctacgggaatttaaagaagtttcctgagtggattccaaaact 22366597  T

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Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 22441661 - 22441540
Alignment:
Q  27 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga 126  Q
    |||||||||||||||||||||| ||||| || |||||| |||||| ||||| |||||||||||||  ||| |||||||||||||||| ||||||||| ||    
T  22441661 agctaatccaagagctaggaaagctaaaacagctaaggaaattgggcttgaccggtgttaggagtaaatatatgagtgctatatctttctcaatcaacga 22441562  T
Q  127 gatgcaaaaaatggagaaacta 148  Q
    ||||||| || |||||||||||    
T  22441561 gatgcaacaattggagaaacta 22441540  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 22352726 - 22352605
Alignment:
Q  27 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga 126  Q
    |||||||  ||||||||||||| ||||| || |||||||| |||||||||  |||||||||||||  ||| ||||||||| ||||||||||||||||| |    
T  22352726 agctaattgaagagctaggaaagctaaatcagctaagggagttggtcttgtacggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatca 22352627  T
Q  127 gatgcaaaaaatggagaaacta 148  Q
    |||||||||| |||||||||||    
T  22352626 gatgcaaaaattggagaaacta 22352605  T

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Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 22356897 - 22356785
Alignment:
Q  36 aagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatgagatgcaaaa 135  Q
    ||||||| |||||||||||||| || |||||||||  ||||| |||| ||| ||||  ||| ||||||| ||||||||||||||||||||||||||||||    
T  22356897 aagagctgggaaaactaaagcagcttagggaattgagcttgagcggtcttaagagtaaatatatgagtggtatatcttcctcaatcaatgagatgcaaaa 22356798  T
Q  136 aatggagaaacta 148  Q
    | |||||||||||    
T  22356797 attggagaaacta 22356785  T

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Target: chr3; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 22634382 - 22634194
Alignment:
Q  19 agtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctca 118  Q
    ||||||| || ||||  ||||||||||||| |||||||| || ||||||||   |||| ||||||||||||||  ||| |||||||||||||||||||||    
T  22634382 agtggtagagttaatagaagagctaggaaagctaaagcagcttagggaattaagcttggtcggtgttaggagtaaatatatgagtgctatatcttcctca 22634283  T
Q  119 atcaatgagatgcaaaaaatggagaaactacaaattcgcgcaaacggatatggcacagttattgacatgcatttgaattcaccaccacc 207  Q
    |||||  |||||||| || ||||||||||| | ||| | | || | |||||  |||| | ||||| ||| ||||||||||||| |||||    
T  22634282 atcaacaagatgcaacaattggagaaactaaatattagaggaatcagatataacacattcattgatatggatttgaattcacccccacc 22634194  T

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Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 22466864 - 22466742
Alignment:
Q  27 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga 126  Q
    ||||||| |||||||||||||| |||||  |  ||||  |||||  |||||| ||||||||||||  ||| ||||||||||||||||||||||||||| |    
T  22466864 agctaattcaagagctaggaaagctaaataagataagaaaattgagcttgataggtgttaggagtaaatatatgagtgctatatcttcctcaatcaatca 22466765  T
Q  127 gatgcaaaaaatggagaaactac 149  Q
     |||||| |||||||||||||||    
T  22466764 aatgcaacaaatggagaaactac 22466742  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 22430119 - 22430008
Alignment:
Q  37 agagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatgagatgcaaaaa 136  Q
    |||||||||||| ||||| || ||||||||||||| ||||  ||||||| |||||  ||| ||||||||| ||| ||||||||||||| |||||||  ||    
T  22430119 agagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacgaa 22430020  T
Q  137 atggagaaacta 148  Q
     |||||||||||    
T  22430019 ttggagaaacta 22430008  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 37929672 - 37929608
Alignment:
Q  27 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagt 91  Q
    |||||||||||||||||||||| ||||| || ||||||||||||| ||||  |||||||||||||    
T  37929672 agctaatccaagagctaggaaagctaaaacagctaagggaattgggcttggccggtgttaggagt 37929608  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 22435547 - 22435442
Alignment:
Q  27 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga 126  Q
    ||||||||  |||||||||||| ||||  || || |||||||||| |||| | | ||||||  ||  ||| ||||||||||||||||||||||||||| |    
T  22435547 agctaatcatagagctaggaaagctaacacagcttagggaattgggcttggttgttgttagtggtaaatatatgagtgctatatcttcctcaatcaataa 22435448  T
Q  127 gatgca 132  Q
    ||||||    
T  22435447 gatgca 22435442  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 22634079 - 22634046
Alignment:
Q  322 aatgaaattactcaaaagtatgccaaacttgttg 355  Q
    ||||||||||||||||||||||||||||||||||    
T  22634079 aatgaaattactcaaaagtatgccaaacttgttg 22634046  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 22613989 - 22613937
Alignment:
Q  231 atgggaagttagagatgttgcctgtgtggattccaaaacttcaaaatcttgtt 283  Q
    ||||||||||||||| |||||| | |||||||||||| || ||||||||||||    
T  22613989 atgggaagttagagaagttgccagagtggattccaaagctacaaaatcttgtt 22613937  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 22352533 - 22352488
Alignment:
Q  247 gttgcctgtgtggattccaaaacttcaaaatcttgttaagctgaaa 292  Q
    |||||||| ||||||| ||||||| || ||||||||||||||||||    
T  22352533 gttgcctgagtggatttcaaaactccagaatcttgttaagctgaaa 22352488  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 22366542 - 22366509
Alignment:
Q  322 aatgaaattactcaaaagtatgccaaacttgttg 355  Q
    ||||||||||||| ||||||||||||||||||||    
T  22366542 aatgaaattactccaaagtatgccaaacttgttg 22366509  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 22441363 - 22441330
Alignment:
Q  322 aatgaaattactcaaaagtatgccaaacttgttg 355  Q
    |||||||||||||| |||||||||||||||||||    
T  22441363 aatgaaattactcataagtatgccaaacttgttg 22441330  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 22466578 - 22466545
Alignment:
Q  322 aatgaaattactcaaaagtatgccaaacttgttg 355  Q
    ||||||||||||| ||||||||||||||||||||    
T  22466578 aatgaaattactccaaagtatgccaaacttgttg 22466545  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 22356671 - 22356627
Alignment:
Q  247 gttgcctgtgtggattccaaaacttcaaaatcttgttaagctgaa 291  Q
    |||||||| ||||||| ||||||| ||||||||||| ||||||||    
T  22356671 gttgcctgagtggatttcaaaactccaaaatcttgtcaagctgaa 22356627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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