View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11125_high_26 (Length: 320)
Name: NF11125_high_26
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_high_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 8389980 - 8390290
Alignment:
| Q |
10 |
gcacagaaccaagaccaaacattttgtaaattctcacgtcaaaatata------------cattgttatagttttaaagtattaataaatggttgaagtc |
97 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8389980 |
gcacagaaccaaaaccaaacattttgtaaattctcacgtcaaaatatatgtggtttattacattgttatagttttaaagaattaataaatggttgaagtc |
8390079 |
T |
|
| Q |
98 |
aagtggtttataagtttagttaaaaggaatatattgtcttacatataatatcattgcacaatattagtttattggtaatttgagtatttgcaatgaaatt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8390080 |
aagtggtttataagtttagttaaaaggaatatattgtcttacatataatatcattgcacagtattagtttattggtaatttgagtatttgcaatgaaatt |
8390179 |
T |
|
| Q |
198 |
agtgatatgcgagaataaagatt--tctcattccacccactataagatcactcttttcaagttagtcaacgcagctaaaacttttgagatgcctcttcta |
295 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8390180 |
agtgatatgcgagaataaagatttctctcattccacccactataagatcactcttttcaagttagtcaacgcagctaaaacttttgagatgcctcttcta |
8390279 |
T |
|
| Q |
296 |
gtatacatttt |
306 |
Q |
| |
|
||||||||||| |
|
|
| T |
8390280 |
gtatacatttt |
8390290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University