View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_high_30 (Length: 266)
Name: NF11125_high_30
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 130 - 249
Target Start/End: Original strand, 8218871 - 8218990
Alignment:
| Q |
130 |
gccgattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8218871 |
gccgattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaac |
8218970 |
T |
|
| Q |
230 |
ataatgaattgggcgaatcc |
249 |
Q |
| |
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|||||||||||||||||||| |
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| T |
8218971 |
ataatgaattgggcgaatcc |
8218990 |
T |
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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 8218758 - 8218836
Alignment:
| Q |
17 |
gtgacgagtgaagaacttgacggtttaaccacgaccatcaacgttgtgacgacacaggcgacattattaacaactcggt |
95 |
Q |
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| T |
8218758 |
gtgacgagtgaagaacttgacggtttaaccgcgaccatcaacgttgtgacgacacaggcgacatcattaacaactcggt |
8218836 |
T |
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Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 30048369 - 30048481
Alignment:
| Q |
133 |
gattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaacata |
232 |
Q |
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||||| ||||| ||||| ||||||||||||||| ||| |||||| |||||| |||||||||| |||||||||||||||||||||||||||||| ||| || |
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| T |
30048369 |
gattatgaacagattctatataagatgtatattgaatgtgttcagggcaagcgatcagtgactgagtacacggctgaatttttgtgtttttctaaacgta |
30048468 |
T |
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| Q |
233 |
atgaattgggcga |
245 |
Q |
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| T |
30048469 |
atgaattaggcga |
30048481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 30050656 - 30050768
Alignment:
| Q |
133 |
gattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaacata |
232 |
Q |
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||||| ||||| ||||| ||||||||||||||| ||| |||||| |||||| |||||||||| |||||||||||||||||||||||||||||| ||| || |
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| T |
30050656 |
gattatgaacagattctatataagatgtatattgaatgtgttcagggcaagcgatcagtgactgagtacacggctgaatttttgtgtttttctaaacgta |
30050755 |
T |
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| Q |
233 |
atgaattgggcga |
245 |
Q |
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||||||| ||||| |
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| T |
30050756 |
atgaattaggcga |
30050768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 3536756 - 3536868
Alignment:
| Q |
133 |
gattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaacata |
232 |
Q |
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||||| ||||| ||||| ||||||||||||||| ||| |||||| |||||| |||||||||| ||||||||||||||||||||| |||||||||||| || |
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| T |
3536756 |
gattatgaacagattctatataagatgtatattgaatgtgttcagggcaagcgatcagtgactgagtacacggctgaatttttgcgtttttctgaacgta |
3536855 |
T |
|
| Q |
233 |
atgaattgggcga |
245 |
Q |
| |
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| T |
3536856 |
acgaattaggcga |
3536868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 245
Target Start/End: Complemental strand, 22926003 - 22925891
Alignment:
| Q |
133 |
gattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaacata |
232 |
Q |
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||||| ||||| ||||| ||||||||||||||| ||| |||||| |||||| |||||||||| |||||||||||||| |||||| |||||||||||| || |
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| T |
22926003 |
gattatgaacagattctatataagatgtatattgaatgtgttcagggcaagcgatcagtgactgagtacacggctgagtttttgcgtttttctgaacgta |
22925904 |
T |
|
| Q |
233 |
atgaattgggcga |
245 |
Q |
| |
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||||||| ||||| |
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| T |
22925903 |
atgaattaggcga |
22925891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 2156700 - 2156806
Alignment:
| Q |
133 |
gattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaacata |
232 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| | ||| |||||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||| || |
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| T |
2156700 |
gattatgaacaaattctatataagatgtatactgaatgtgttcagggcaagcgatcagtgactgagtacacggctgaatttttgcgtttttctgaatgta |
2156799 |
T |
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| Q |
233 |
atgaatt |
239 |
Q |
| |
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||||||| |
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| T |
2156800 |
atgaatt |
2156806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 249
Target Start/End: Complemental strand, 32163167 - 32163051
Alignment:
| Q |
133 |
gattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaacata |
232 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||| ||| |||| | ||||| ||||| ||||||||||||| |||| |||| |||||||||||| || |
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| T |
32163167 |
gattacgaacaaattttgtataatatgtatattgaatgtgtttagggcaaccgatcaatgacagagtacacacatgaaattttccgtttttctgaacgta |
32163068 |
T |
|
| Q |
233 |
atgaattgggcgaatcc |
249 |
Q |
| |
|
|| |||||||| ||||| |
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| T |
32163067 |
ataaattgggcaaatcc |
32163051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 22571804 - 22571733
Alignment:
| Q |
133 |
gattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacg |
204 |
Q |
| |
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||||| || |||||| ||||||||||||||||| ||| |||| | |||||||||||| |||||||||||||| |
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| T |
22571804 |
gattatgatcaaattttgtataagatgtatattgaatgtgtttagggcaagtgatcaatgacagagtacacg |
22571733 |
T |
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