View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11125_high_36 (Length: 239)
Name: NF11125_high_36
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_high_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37638673 - 37638451
Alignment:
| Q |
1 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37638673 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatccggattt |
37638574 |
T |
|
| Q |
101 |
ggctggaaagcggtagcagtcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatggcttg |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37638573 |
ggctggaaagcggtagcaatcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatggcttg |
37638474 |
T |
|
| Q |
201 |
caagacatgttgaacatatgttt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37638473 |
caagacatgttgaacatatgttt |
37638451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37710434 - 37710212
Alignment:
| Q |
1 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggattt |
100 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37710434 |
aaatacaatgttgtgtggatttccattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggattt |
37710335 |
T |
|
| Q |
101 |
ggctggaaagcggtagcagtcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatggcttg |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37710334 |
ggctggaaagcggtagcaatcggatatgcatgtggggcaatattcgggttgctattcggatataatgtattcttcttcaccggtaaacccgaatggcttg |
37710235 |
T |
|
| Q |
201 |
caagacatgttgaacatatgttt |
223 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37710234 |
taagacatgttgaacatatgttt |
37710212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37822831 - 37822609
Alignment:
| Q |
1 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggattt |
100 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37822831 |
aaatacaatgttatgtggatttccattgtctaaatcatgcaaaaatgaggaagatcggccacctcattcaacatctgaagatgaagaagaatcaggattt |
37822732 |
T |
|
| Q |
101 |
ggctggaaagcggtagcagtcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatggcttg |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37822731 |
ggctggaaagcggtagcaatcggatatgcatgtggggcaatcttcgggttgctattcggatataatgtattcttcttcactggtaaacccgaatggcttg |
37822632 |
T |
|
| Q |
201 |
caagacatgttgaacatatgttt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37822631 |
caagacatgttgaacatatgttt |
37822609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 37394120 - 37394341
Alignment:
| Q |
2 |
aatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggatttg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37394120 |
aatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatcttccaccgcattcaacatctgaagatgaagaagaatcaggatttg |
37394219 |
T |
|
| Q |
102 |
gctggaaagcggtagcagtcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatggcttgc |
201 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
37394220 |
gctggaaagcggtagcaatcggatatggatgtggggcaatatatgggttgctgttgggatataatgtattcttcttcactggaaaaccccaatggcttgc |
37394319 |
T |
|
| Q |
202 |
aagacatgttgaacatatgttt |
223 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
37394320 |
aagacatgttgaaaatatgttt |
37394341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 37532027 - 37531828
Alignment:
| Q |
1 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532027 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggattt |
37531928 |
T |
|
| Q |
101 |
ggctggaaagcggtagcagtcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatggcttg |
200 |
Q |
| |
|
||||||||||| || ||| | ||||||| |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37531927 |
ggctggaaagctgtggcaattggatatggatgtggggcaatatccgggttcctcttgggatataatgtattcttcttcactggtaaacctcaatggcttg |
37531828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 37402231 - 37402430
Alignment:
| Q |
1 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37402231 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatccggattt |
37402330 |
T |
|
| Q |
101 |
ggctggaaagcggtagcagtcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatggcttg |
200 |
Q |
| |
|
||||||||||| || ||| | ||||||| |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37402331 |
ggctggaaagctgtggcaattggatatggatgtggggcaatatccgggttcctcttgggatataatgtattcttcttcactggtaaacctcaatggcttg |
37402430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 37593131 - 37592932
Alignment:
| Q |
1 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37593131 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatccggattt |
37593032 |
T |
|
| Q |
101 |
ggctggaaagcggtagcagtcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatggcttg |
200 |
Q |
| |
|
||||||||||| || ||| | ||||||| |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37593031 |
ggctggaaagctgtggcaattggatatggatgtggggcaatatccgggttcctcttgggatataatgtattcttcttcactggtaaacctcaatggcttg |
37592932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 37701613 - 37701418
Alignment:
| Q |
1 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37701613 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatcttccacctcattcaacatctgaagatgaagag---tcaggattt |
37701517 |
T |
|
| Q |
101 |
ggctggaaagcggtagcagtcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatggctt |
199 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
37701516 |
ggctggaaagcggtagcaataggatatgcatgtggggcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaacctcaatggctt |
37701418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 37434637 - 37434439
Alignment:
| Q |
1 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggattt |
100 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37434637 |
aaatacaatgttatgtggattcccattgtctaaatcatgcaaaaacgagaaagatctgccaccacattcaacatctgaagacgaagaagaatcaggattt |
37434538 |
T |
|
| Q |
101 |
ggctggaaagcggtagcagtcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatggctt |
199 |
Q |
| |
|
||||||||| |||||| ||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
37434537 |
ggctggaaaacggtagtgatcggatatggatgtggggcaatatttgggttgctgttgggatataatgtattcttcttcactggaaaaccccaatggctt |
37434439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 37695521 - 37695323
Alignment:
| Q |
2 |
aatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggatttg |
101 |
Q |
| |
|
||||| ||||| |||||||||| |||||||| || |||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37695521 |
aatactatgttatgtggattcccattgtctagattatgcaaaaatgatgaagatctaccaccacattcgacatctgaagatgaagaagaatcaggatttg |
37695422 |
T |
|
| Q |
102 |
gctggaaagcggtagcagtcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatggcttg |
200 |
Q |
| |
|
|||||||||| || ||| | ||||||| |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37695421 |
gctggaaagctgtggcaattggatatggatgtggggcaatatccgggttcctcttgggatataatgtattcttcttcactggtaaacctcaatggcttg |
37695323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 37439996 - 37439803
Alignment:
| Q |
2 |
aatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggatttg |
101 |
Q |
| |
|
||||||||||| ||||||| | ||||||||| |||||||||||||||||||||| ||||| |||||||| |||| ||| |||| ||||||||||||| |
|
|
| T |
37439996 |
aatacaatgttatgtggatatccattgtctaagccatgcaaaaatgaggaagatcttccaccatattcaacaactgatgatcaagaggaatcaggatttg |
37439897 |
T |
|
| Q |
102 |
gctggaaagcggtagcagtcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatg |
195 |
Q |
| |
|
|||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
37439896 |
gctggaaagctgtggtgatcggatatggatgtggggcaatattcgggttgctattgggatataatctattcttcttcactggaaaacctgaatg |
37439803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 37427976 - 37427803
Alignment:
| Q |
2 |
aatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggatttg |
101 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
37427976 |
aatacaatgttatgtggattcatattgtctaaatcatgcaaaaatgatgaagatcaaccaccacattcaacatctgaagaagaagaggaatcaggatttg |
37427877 |
T |
|
| Q |
102 |
gctggaaagcggtagcagtcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttc |
175 |
Q |
| |
|
||||||||||||||| | | |||||||||||||| ||||||| ||| || | |||||||||| |||| ||||| |
|
|
| T |
37427876 |
gctggaaagcggtagtaataagatatgcatgtgggacaatatttgggatgatcttgggatatattgtactcttc |
37427803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 37383559 - 37383693
Alignment:
| Q |
1 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggattt |
100 |
Q |
| |
|
|||||||||||| |||||||| | |||||| ||||||||||||| ||| |||||| | | || ||||||||||| | |||||||| ||||| |||||| |
|
|
| T |
37383559 |
aaatacaatgttatgtggatttccattgtcaaaatcatgcaaaactgatgaagattggtcgccatattcaacatctaatgatgaagaggaatctggattt |
37383658 |
T |
|
| Q |
101 |
ggctggaaagcggtagcagtcggatatgcatgtgg |
135 |
Q |
| |
|
||||||||||| || | | | |||||||||||||| |
|
|
| T |
37383659 |
ggctggaaagcagtggtaataggatatgcatgtgg |
37383693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 16844230 - 16844451
Alignment:
| Q |
2 |
aatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggatttg |
101 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16844230 |
aatacaatgttgtgtggattgccattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttg |
16844329 |
T |
|
| Q |
102 |
gctggaaagcggtagcagtcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatggcttgc |
201 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| ||||| |
|
|
| T |
16844330 |
gctggaaagcggtaacaatcggatatgcatgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaaccccaatgccttgc |
16844429 |
T |
|
| Q |
202 |
aagacatgttgaacatatgttt |
223 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
16844430 |
aagacatgttgaacgtatgttt |
16844451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 24218964 - 24219174
Alignment:
| Q |
1 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggattt |
100 |
Q |
| |
|
|||| ||||||| |||||||| | |||||| ||||||||||||||||| ||||||| |||||| ||||||| ||| | ||||| || ||||| |||||| |
|
|
| T |
24218964 |
aaatgcaatgttatgtggatttccattgtcaaaatcatgcaaaaatgatgaagatcggccaccatattcaacgtctaatgatgacgaggaatcgggattt |
24219063 |
T |
|
| Q |
101 |
ggctggaaagcggtagcagtcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatggcttg |
200 |
Q |
| |
|
||||||||||| |||||| | ||||||| |||||||||| || | || | || |||||||||| || | ||||||||||| ||||| ||||||||| |
|
|
| T |
24219064 |
ggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatatagtg---tgttcttcactgggaaacctcaatggcttg |
24219160 |
T |
|
| Q |
201 |
caagacatgttgaa |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24219161 |
caagacatgttgaa |
24219174 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 16846896 - 16846966
Alignment:
| Q |
1 |
aaatacaatgttgtgtggattccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaac |
72 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
16846896 |
aaatacaatgttgtgtggattcccatcgtctaaatcat-aaaaaatgaggaagatctgccaccacattcaac |
16846966 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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