View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_high_4 (Length: 705)
Name: NF11125_high_4
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 15 - 687
Target Start/End: Original strand, 32243436 - 32244108
Alignment:
| Q |
15 |
cagagagcaggagacagaggatataccgttcatcttgtgattggcatggcagggcaagacaagcaatccatctggaaaacaagaccgggtcatcccaatg |
114 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243436 |
cagagagcaagagacaaaggatataccgttcatcttgtgattggcatggcagggcaagacaagcaatccatctggaaaacaagaccgggtcatcccaatg |
32243535 |
T |
|
| Q |
115 |
actcgatctttccacaaccaaaacggtctttgtatcgtgggggtgaatttgggtacattagactagtggctacaaagcagaagctcgtggtttcttatgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243536 |
actcgatctttccacaaccaaaacggtctttgtatcgtgggggtgaatttgggtacattagactagtggctacaaagcagaagctcgtggtttcttatgt |
32243635 |
T |
|
| Q |
215 |
tggaaatcatgatggcgaggtgcatgacacattggaaattatggcatctggagaagttttcaatggtaatattaatgtcgatattggtagtgataaacct |
314 |
Q |
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| T |
32243636 |
tggaaatcatgatggcgaggtgcatgacacattggaaattatggcatctggagaagttttcaatggtaatattaatgtcgatattggtagtgctaaacct |
32243735 |
T |
|
| Q |
315 |
aaaggtttgattgaagaagctacattatctcggtatgtccaaggaggaagtgtactggtgcttggggcctttatgggttacattctctgttgggttatac |
414 |
Q |
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| T |
32243736 |
aaaggtttgattgaagaagctacattatcccggtatgtccaaggaggaagtgtactggtgcttggggcctttatgggttacattctctgttgggttatac |
32243835 |
T |
|
| Q |
415 |
atgcaaggaagaagcctgagtccaagagtggttgtaccatcgcgaagactgagaaacatgattagttactactctttacaacnnnnnnnnataggaggta |
514 |
Q |
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| T |
32243836 |
atgcaaggaagaagcctgagtccaagagtggttgtactatcgcgaagactgagaaacatgattagttactactctttactaactttttttataggaggta |
32243935 |
T |
|
| Q |
515 |
tagaattaagtatcactcgtatatatttgtttgatcaaaaccctgatatacttggagactttatgtttgaacatatgcaagttttctccctaaaagcttg |
614 |
Q |
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| T |
32243936 |
tagaattaagtatcactc----atatttgtttgatcaaaactctgatatacttggagactttatgtttgaacatatgcaagttttctccctaaaagcttg |
32244031 |
T |
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| Q |
615 |
tcgt----ttaaggcatcccttgtagtgacttgtgttgttgtataatattcaagttttctcactatgattttgtatg |
687 |
Q |
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| T |
32244032 |
tcgtttaattaaggcatcccttgtagtgacttgtgttgttgtataatattcaagttttctcactatgattttgtatg |
32244108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 37 - 482
Target Start/End: Original strand, 32248539 - 32249003
Alignment:
| Q |
37 |
ataccgttcatcttgtgattggcatggcagggcaagacaagcaatccatctggaaaacaagaccgggtcatcccaatgactcgatctttccacaaccaaa |
136 |
Q |
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| T |
32248539 |
ataccattcatcttgtgatcggcatggcagggcaagactggcaacccatgtggcgaccaagaccggatcatcccgatgtcccaatctatccacaaccaaa |
32248638 |
T |
|
| Q |
137 |
acggtctttgtatcgtgggggtgaatttgggtacattagactagtggctacaaagcagaagctcgtggtttcttatgttggaaatcatgatggcgaggtg |
236 |
Q |
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| T |
32248639 |
acgatctttgtaccgcgggggtgagttcggatacattagattgatggctacaaagcagaatctcgtgatttcttatgttggtaatcatgatggcgaggtg |
32248738 |
T |
|
| Q |
237 |
catgacacattggaaattatggcatctggagaagttttcaatgg---------------taatattaatgtcgatattggtagtgataaacctaaaggtt |
321 |
Q |
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|||||||||||||| ||| ||| ||||||||||||| | | ||| |||| |||||| || ||||||||||| ||||||| ||||| |
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| T |
32248739 |
catgacacattggagattctggaatctggagaagttgttagtggtggtggtggtaacgataatgttaatggcggtattggtagtgctaaacctgaaggtc |
32248838 |
T |
|
| Q |
322 |
tgattgaagaagctacattatctcggtatgtccaaggaggaagtgtactggtgcttggggcctttatgggttacattctctgttgggttatacatgcaag |
421 |
Q |
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|||| ||||| | || || || |||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| ||| |||||| || |
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| T |
32248839 |
agattaaagaatccacgttgtcgtggtatgtccagggaggaagtgtactagtgcttggggcctttatgggctacattcttggtttcgtttcacatgctag |
32248938 |
T |
|
| Q |
422 |
gaaga---agcctgagtccaagagtggttgtaccatcgcgaagactga-gaaacatgattagtta |
482 |
Q |
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||||| |||| ||||||| |||||||| || | || ||||||||| |||||||||||||||| |
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| T |
32248939 |
gaagaagcagcccgagtccaggagtggttttagccccgtgaagactgaggaaacatgattagtta |
32249003 |
T |
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