View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_high_40 (Length: 231)
Name: NF11125_high_40
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 44471506 - 44471311
Alignment:
| Q |
21 |
cctaatacgtattacgctgcttctatatgcttcttgacatttgatctttgacgaaatataataagcatattaattgattccagtaattaatagtgttcgc |
120 |
Q |
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| T |
44471506 |
cctaatacgtattacactgcttctatatgcttcttgacatttgatctttgacgaaatataataagcatattaattaattctagtaattaatagtgttcgc |
44471407 |
T |
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| Q |
121 |
aataattgacgccaaagggaacacctgaaggaaggaaagagtcgaagttgaaggtgatgggagggtagtcacggtggtatacgatggcggtctctg |
216 |
Q |
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| T |
44471406 |
aataattgacgccaaagggaccacctgaaggaaggaaagagtcgaagttgaaggtgataggagggtagtcacggtggtatacgatggcggtctctg |
44471311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 44485908 - 44485860
Alignment:
| Q |
42 |
tctatatgcttcttgac-atttgatctttgacgaaatataataagcata |
89 |
Q |
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| T |
44485908 |
tctatatgcttctggacgatttgatctttgacaaaatataatatgcata |
44485860 |
T |
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