View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_high_41 (Length: 223)
Name: NF11125_high_41
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_high_41 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 11545121 - 11544917
Alignment:
| Q |
20 |
atcaattaaattagagtcattcaaagaaaattatagagtaaacaatcatttggtctctaaatgtatcaaaactatagaagcatgcatcttttatctgaaa |
119 |
Q |
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| T |
11545121 |
atcaattaaattagagtcattcaaataaaattatagagtaaacaatcatttggtctctaaatgtatcaaaactatagaagcatgcatcttttatctgaaa |
11545022 |
T |
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| Q |
120 |
attttgaaaaatgaaacacacattcaaagaagaaactacctaaccaaaaacatatttgaggaccaaacc-aaagtcaccaccagagacacattcgagtat |
218 |
Q |
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| T |
11545021 |
attttgtaaaatgaaacacacattcaaagaagaaactacctaaccaaaaacatatttgaggaccaaaccaaaagtcaccaccagagacacattcgagtat |
11544922 |
T |
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| Q |
219 |
atttt |
223 |
Q |
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||||| |
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| T |
11544921 |
atttt |
11544917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 11558425 - 11558367
Alignment:
| Q |
128 |
aaatgaaacacacattcaaagaagaaactacctaaccaaaaacatatttgaggaccaaa |
186 |
Q |
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|||||||||||||||||| |||| |||| | |||||||||||||||||||||||||||| |
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| T |
11558425 |
aaatgaaacacacattcagagaacaaacgagctaaccaaaaacatatttgaggaccaaa |
11558367 |
T |
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