View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_high_42 (Length: 214)
Name: NF11125_high_42
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_high_42 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 51417865 - 51417667
Alignment:
| Q |
17 |
catttcatcatctgattatttgattatatttttacacaatgatattattaagacatctagataagatatatannnnnnnnnaaagggataagatatataa |
116 |
Q |
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| T |
51417865 |
catttcatcatataattatttgattatatttttacacaatgatattataaagacatctagataagatata-cttttttttaaaagggataagatatataa |
51417767 |
T |
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| Q |
117 |
ttatatatagtatag--tcattaaagttttnnnnnnntannnnnnnggtagaacacttaaagttaaaatataactcttttttgactgaaaaatatatatt |
214 |
Q |
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| T |
51417766 |
ttatatatagtatagtctcattaaagttttaaaaaaatatatttttggtagaacacttaaagttaaaatataactcttttttgactgaaaaatatatatt |
51417667 |
T |
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