View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_high_43 (Length: 213)
Name: NF11125_high_43
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 9e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 11593349 - 11593529
Alignment:
| Q |
15 |
acttatcaccctttagtgtaaataaattgagctacctagcaccgacataaacgataaatgttagtaannnnnnnagagttaatgataatataagtaccgt |
114 |
Q |
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| T |
11593349 |
acttatcaccctttagtgtaaataacttgagctacctagcaccgacataaacgataaatgtta---atttttttagagttaatgataatataagtaccgg |
11593445 |
T |
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| Q |
115 |
attaattaggaaagataaatctattgtctagatttgtgcttcatg--ttgtttgcgtcatttttgtttttacatttgccattca |
196 |
Q |
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| T |
11593446 |
attaattaggaaagataaatctattgtatagatttgtgcttcatggcttgtttgtgtcatttttgtttttacatttgccattca |
11593529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 11605265 - 11605445
Alignment:
| Q |
15 |
acttatcaccctttagtgtaaataaattgagctacctagcaccgacataaacgataaatgttagtaannnnnnnagagttaatgataatataagtaccgt |
114 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
11605265 |
acttatcaccctttagtgtaaataacttgagctacctagcaccgacataaacgataaatgtta---atttttttagagttaatgataatataagtaccgg |
11605361 |
T |
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| Q |
115 |
attaattaggaaagataaatctattgtctagatttgtgcttcatg--ttgtttgcgtcatttttgtttttacatttgccattca |
196 |
Q |
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| T |
11605362 |
attaattaggaaagataaatctattgtatagatttgtgcttcatggcttgtttgtgtcatttttgtttttacatttgccattca |
11605445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 11612714 - 11612884
Alignment:
| Q |
17 |
ttatcaccctttagtgtaaataaattgagctacctagcaccgacataaacgataaatgttagtaannnnnnnagagttaatgataatataagtaccgtat |
116 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| || |
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| T |
11612714 |
ttatcaccctttagtgtaaataagttgagctacctagcaccgaca------ataaatgtta---atttttttagagttaatgataatataagtaccggat |
11612804 |
T |
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| Q |
117 |
taattaggaaagataaatctattgtctagatttgtgcttcatgttgtttgcgtcatttttgtttttacatttgccattca |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11612805 |
taattaggaaagataaatctattgtctagatttgtgcttcatgttgtttgcgtcatttttgtctttacatttgccattca |
11612884 |
T |
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