View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_high_44 (Length: 206)
Name: NF11125_high_44
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 29883674 - 29883847
Alignment:
| Q |
20 |
tgaatttctattgtcttcccccacaagtaacatgtatttgctaccccctcggtcttcggataatactttactctcaccaagcattttttcttcacctcca |
119 |
Q |
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| T |
29883674 |
tgaatttctattgtcttcccccacaagtaacatgtatttgctaccccctcggtcttcggataatactttactctcaccaagcattttttcttcacctcca |
29883773 |
T |
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| Q |
120 |
tctcttgaataccatttctatccacatctacaaaatgggatttcaagctctggtcctccgtctccactctctgc |
193 |
Q |
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| T |
29883774 |
tctcttgaataccatttctatccacatctacaaaatgggatttcatgctctggtcctccgtctccactttctgc |
29883847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 29880111 - 29880011
Alignment:
| Q |
93 |
tcaccaagcattttttcttcacctccatctcttgaataccatttctatccacatctacaaaatgggatttcaagctctggtcctccgtctccactctctg |
192 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| |
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| T |
29880111 |
tcaccaagcattttttcttcatttccatctcttgaataccctttctatccacatctaccaaacatgatttcaagctctggtcctccgtctccactttctg |
29880012 |
T |
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| Q |
193 |
c |
193 |
Q |
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| T |
29880011 |
c |
29880011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 17676068 - 17676007
Alignment:
| Q |
126 |
gaataccatttctatccacatctacaaaatgggatttcaagctctggtcctccgtctccact |
187 |
Q |
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| T |
17676068 |
gaataccctttctatccacatctacaaaatgggattttaagtccggatcctccgtctccact |
17676007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 32670287 - 32670381
Alignment:
| Q |
93 |
tcaccaagcattttttcttcacctccatctcttgaataccatttctatccacatctacaaaatgggatttcaagctctggtcctccgtctccact |
187 |
Q |
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||||||| ||| |||||||| ||| |||| || |||| || ||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||| |
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| T |
32670287 |
tcaccaaacatgttttcttcgccttcatcactcgaatgccctttctatccacatctacaaaatgtgattttaagccctgatcctccgtctccact |
32670381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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