View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_low_1 (Length: 1127)
Name: NF11125_low_1
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 583 - 1107
Target Start/End: Original strand, 52853759 - 52854283
Alignment:
| Q |
583 |
ctgtaaagtcctccttcgaaaccaacagcttcctgttcagggtccgccaagacaaccaagtgttttatcatgcgatatgcatgctcactgttgtgaagac |
682 |
Q |
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| T |
52853759 |
ctgtgaagtcctccttcgaaaccaacagcttcctgttcagggtccgccaagacaaccaagtgttttatcatgcgatatgcatgctcactgttgtgaagac |
52853858 |
T |
|
| Q |
683 |
gagcccacaaggcagctttccaagttgttgaccacccaggaccttcatctcctgtaacataaagcaagaaatgtgattgctgttaagatatattatttct |
782 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52853859 |
gagcccacaatgcagctttccaagttgttgaccacccgggaccttcatctcctgtaacataacgcaagaaatgtgattgctgttaagatatattatttct |
52853958 |
T |
|
| Q |
783 |
agtattaaacctaaaaagatacaaccttaggtcattttggtttacaaggttgtacatgaacatgaacgagggaattcctaatttgagaatgtagtatatt |
882 |
Q |
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| T |
52853959 |
agtattaaacctaaaaagatacaaccttaggtcattttggtttacaaggttgtacatgaacatgaacgagggaattcctaatttgagaatgtagtatatt |
52854058 |
T |
|
| Q |
883 |
tgttgtgatcattttctacattacccggaggttttaatgaataaagtgacttaactattaaaatcaatagacgtagtactattacctaaaataactacta |
982 |
Q |
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| T |
52854059 |
tgttgtgattattttctacattacccggaggttttaatgaataaagtgacttaactattaaaatcaatagacgtagtactattacctaaaataactacta |
52854158 |
T |
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| Q |
983 |
tgtcggggacaaaaatcagaattaaagctcaagtaaaagacctcttttaattagactataatttacagctttacagagatttggagttttctcaatattt |
1082 |
Q |
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| T |
52854159 |
tgtcggggacaaaaatcagaattaaagctcaagtaaaagacctcttttaattagactataatttacagctttacagagatttggagttttctcaatattt |
52854258 |
T |
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| Q |
1083 |
attgtgtgccccggaaacatgccaa |
1107 |
Q |
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| T |
52854259 |
attgtgtgccccggaaacaagccaa |
52854283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 129 - 480
Target Start/End: Original strand, 48483673 - 48484025
Alignment:
| Q |
129 |
aagggagtgtgtcttaacacacttcaaccaattattatacgagtaaactatcccgggtgatgaatttgccacgaccttgttccctctataatgtagtctc |
228 |
Q |
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| T |
48483673 |
aagggggtatgttttaatacacctcaaccaattattatacgagtaaactttgcctggtgataaatttgtcacgaccatgctccctttataatgtagtctc |
48483772 |
T |
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| Q |
229 |
attttggaattctggttttgtaaccaaaggccaacttcatgcagatcaccttctttccagcagatgtttactgttaccccgccacgcgcttttaatcctt |
328 |
Q |
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| T |
48483773 |
attttggaattctggttttgacaccaaaggccaacttcatgcaaatttccttctttccaacagatgttgaccgtaacaccgccacgcgcttttaatcctt |
48483872 |
T |
|
| Q |
329 |
tcacacaaccatttgcccatttatcccgaggcaacgcaggaagtaagtagaggtccttcgttgtactttgaacaagcatttctgcaattgctgctgaaaa |
428 |
Q |
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| T |
48483873 |
tcacacaaccatttgcccatttatcacgaggtaatgcaggaagtaagtagaggtcctttgttgtgctctgaacaagcatttctgcaattgcagatgaaaa |
48483972 |
T |
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| Q |
429 |
actgaca-caaacaattaccattttctcagccaatgtgactcaaaattatgag |
480 |
Q |
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| T |
48483973 |
actgacaccaaacaatgatgattttctcagcgaaactaattcaaaattatgag |
48484025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 496 - 752
Target Start/End: Original strand, 48484109 - 48484362
Alignment:
| Q |
496 |
acaagatacacaaacatggccgttaaagacgagacttacccaaagttcgcatcaatttggaatggaggatgtgctgtgaacagattactgtaaagtcctc |
595 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||||| |
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| T |
48484109 |
acaagatacacaaacaataccgttaaagatgagacttacccaaagtttgcatcaatttggaaaggaggatgtgctgtgaacaggttactataaagtcctc |
48484208 |
T |
|
| Q |
596 |
cttcgaaaccaacagcttcctgttcagggtccgccaagacaaccaagtgttttatcatgcgatatgcatgctcactgttgtgaagacgagcccacaaggc |
695 |
Q |
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| T |
48484209 |
cttcgaaatcttt---ttcacgctcagggtccaccaatataatcaaatgttttatcatgcgatacgcatgctcactgttatggagatgagcccacaatgc |
48484305 |
T |
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| Q |
696 |
agctttccaagttgttgaccacccaggaccttcatctcctgtaacataaagcaagaa |
752 |
Q |
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| T |
48484306 |
agctttccaagttgttgaccacccaggaccttcgtctcctgtaacacaatgcaagaa |
48484362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 1004 - 1101
Target Start/End: Original strand, 48484650 - 48484747
Alignment:
| Q |
1004 |
ttaaagctcaagtaaaagacctcttttaattagactataatttacagctttacagagatttggagttttctcaatatttattgtgtgccccggaaaca |
1101 |
Q |
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| T |
48484650 |
ttaaagctcgcgtaaaatacctcttttaattagactataatccacagctttacagagatctggagttttctcaagatttattgtgtgccccggaaaca |
48484747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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