View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_low_10 (Length: 558)
Name: NF11125_low_10
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 340 - 539
Target Start/End: Complemental strand, 25599564 - 25599365
Alignment:
| Q |
340 |
gttttagtgatgaggttgttgtggaaaatgagaatgagataataggtggtgcaaatagtagaggaaattgtttgaattgcaaagtggctccttcgggtat |
439 |
Q |
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| T |
25599564 |
gttttagtgatgaggttgttgtggaaaatgagaatgggataataggtggtgcaaatagtagaggaaattgtttgaattgcaaagtggctcctaagggtat |
25599465 |
T |
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| Q |
440 |
ttttggggtaatgcctctgcatcctattaggacagttcgtagttgatgagtttgttacttgttagatacatgcatttgttaagcttttagactcttcaat |
539 |
Q |
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| T |
25599464 |
ttttggggtaatgcctctgcatcctattaggacagttcgtagttgatgagtttgttacttgttagatacatgcatttgttaagcttttagactcttcaat |
25599365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 25599701 - 25599620
Alignment:
| Q |
203 |
gttagcatcaccaccaacaagtccacatgaagaaattaatgatattcatgttcatcaaagtgttgttactaatgatagtttt |
284 |
Q |
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| T |
25599701 |
gttagcatcaccaccaacaagaccacatgaagaaaccaatgatcttcatgttcatcaaagtgttgttactaatgatagtttt |
25599620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 8e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 54719003 - 54719168
Alignment:
| Q |
19 |
cccataataagggtttgttatggttagggtcgagagtgttccatgaaggaggaagattggtggagaggatttgtttgagaaaatcgtcgtgatggttgaa |
118 |
Q |
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| T |
54719003 |
cccataataagggtttgttatggtttgggtcgagagtgttccatgaaggaggaagattggtggagaggatttgtttgagaaaatcgtcgtgatggttgaa |
54719102 |
T |
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| Q |
119 |
tgtgtcgttgtga---ttgttgttgttgttaatttggatctgactttggagaggaatgggaatttc |
181 |
Q |
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| T |
54719103 |
tgtgtcgttgtgattgttgttgttgttgttaatttggatctgactttggagaggaatgggaatttc |
54719168 |
T |
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