View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_low_15 (Length: 436)
Name: NF11125_low_15
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_low_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 10 - 436
Target Start/End: Complemental strand, 28404660 - 28404234
Alignment:
| Q |
10 |
caaacccattaatcattgtattaaacgaaacgcaatctctaacaaaactttcctcaaacaccttatacgcattaccaacatccccaaaaccacaataaaa |
109 |
Q |
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| T |
28404660 |
caaacccattaatcattgtattaaacgaaacacaatctctaacaaaactttcgtcaaacaccttatacgcattaacaacatccccaaaaccacaataaaa |
28404561 |
T |
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| Q |
110 |
attcaaaagagcattattaacaaaaacatcagaaccaaacccatttctcaaaacatgacaatgaacctgaaaaccaaactggggagcactaatcaacaca |
209 |
Q |
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| T |
28404560 |
attcaaaagagcattattaacaaaaacatcagaaccaaacccatttctcaaaacatgacaatgaacctgaaaaccaaactggggagcactaatcagcaca |
28404461 |
T |
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| Q |
210 |
ttagcacatgcttttagtaaaaacggaaaagtgaaagaatcaggcaaaacatacgaattcagcatcgttttgaagagggaaaaaggatgttgaggtggag |
309 |
Q |
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| T |
28404460 |
ttagcacatgcttttaataaaaaaggaaaagtgaatgaatcaggcaaaactgaagaatttagcatcgttttgaagagggaaaaaggatgttgaggtggag |
28404361 |
T |
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| Q |
310 |
aatggatttgtgagtatgctttgataatggcattccataggaagatatctgggttggtgatttgggtgaagagagtgtgagaatggtgtaaggattgtga |
409 |
Q |
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| T |
28404360 |
aatggatttgtgagtatgctttgataatggcattccataggaagatatctgggttggtgatttgggtgaagagagtgtgagaatggtgtaaggattgtga |
28404261 |
T |
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| Q |
410 |
ggaagatgaagaagcgtagaaggtgaa |
436 |
Q |
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| T |
28404260 |
ggaagatgaagaagcgtagaaggtgaa |
28404234 |
T |
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