View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_low_17 (Length: 432)
Name: NF11125_low_17
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_low_17 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 419
Target Start/End: Complemental strand, 41964234 - 41963833
Alignment:
| Q |
17 |
agatctttacttaggaacttttggtaaacagaa-actaactcctattcttttttaaccgtcgcttaaagagtgtttacacaaaccaataaatctattaaa |
115 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || ||| |||| ||||||||||||||||||||||||||||| |
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| T |
41964234 |
agatctttacttaggaacttttggtaaactgaatactaactcctattcttttttaactgttactttaagactgtttacacaaaccaataaatctattaaa |
41964135 |
T |
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| Q |
116 |
ttttgatattttcataaacaatttcatctatttctgtattaaccttctttatttatcatctcaagccatttatatatttgaaaacatctaatacaacttt |
215 |
Q |
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| T |
41964134 |
ttttgatattttcataaacaatttcatctatttctatattaaccttcattatttatcatctcaaaccatttatatatttgaaaacatctaatacaacttt |
41964035 |
T |
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| Q |
216 |
aaaatttgaaaatgacaattatagatgaataaaaatttctccatgcatgcacaacaaataatagcttatcatcttttcaaaaataatagcttatcttatn |
315 |
Q |
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| T |
41964034 |
aaaatttgaaaatgacaattatagatgaataaaaatttctccatgcatgcacaacaaataatagcttatcatcttttcataaataatagcttatcttat- |
41963936 |
T |
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| Q |
316 |
nnnnnnnncaaattaattatagcttaatatgaaataacaattaatattcgaatatatttttataggtactgaggaagaggctgcagaagcatatgacata |
415 |
Q |
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| T |
41963935 |
-aaaaaaacaaattaattatagcttaatatgaaataacaattaatattcgaatatatttttataggtaccgaggaagaggctgcagaagcatatgacata |
41963837 |
T |
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| Q |
416 |
gctg |
419 |
Q |
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|||| |
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| T |
41963836 |
gctg |
41963833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 150303 - 150245
Alignment:
| Q |
87 |
tgtttacacaaaccaataaatctattaaattttgata-ttttcataaacaatttcatct |
144 |
Q |
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| T |
150303 |
tgtttacacaaaccaataaagctattaaattttgctactttttattaacaatttcatct |
150245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 16497992 - 16498050
Alignment:
| Q |
87 |
tgtttacacaaaccaataaatctattaaattttgata-ttttcataaacaatttcatct |
144 |
Q |
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| T |
16497992 |
tgtttacacaaaccaataaagctattaaattttgctactttttattaacaatttcatct |
16498050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 13660542 - 13660484
Alignment:
| Q |
87 |
tgtttacacaaaccaataaatctattaaattttgata-ttttcataaacaatttcatct |
144 |
Q |
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| T |
13660542 |
tgtttacacaaaccaataaagctattaaattttgctactttttattaacaatttcatct |
13660484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 45848935 - 45848984
Alignment:
| Q |
97 |
aaccaataaatctattaaattttgata--ttttcataaacaatttcatct |
144 |
Q |
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| T |
45848935 |
aaccaataaaactattaaattttgctagtttttcataaacaatttcatct |
45848984 |
T |
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