View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_low_18 (Length: 411)
Name: NF11125_low_18
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 5575406 - 5575040
Alignment:
| Q |
19 |
taaaagggtcctataataaggaataaagatagtatatgtgatatatattgtagactattgttgtgtttggtgtgtcattgcaatgtgagaaa--acggca |
116 |
Q |
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| T |
5575406 |
taaaacggtcttataataaggaacgaaggtagtatatgtgatatatattatagactattgttgtgg---------cgttgcaatgtgagaaatcacggca |
5575316 |
T |
|
| Q |
117 |
cgaaaccgcgttgatgtggaagtagctatttctagcttctttcttttcacggttaaagctctatttgacgtacgtttggcacacatgccgccaaatcaaa |
216 |
Q |
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| T |
5575315 |
caaaaccgcgttgatgtggaagtagctatttctagcttctttcttttcacggtcaatgctctatttgacgtacatttggcacacatgccgccaaatcaaa |
5575216 |
T |
|
| Q |
217 |
cagattatacatacattatttattgaaggaatctaaaagatagatttttgactggaaggtgtacattttaaattcacttttgtaaaaattatcctttcaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5575215 |
cagattatacatacattatttattgaaggaatctaaaagatagatttttaaccggagggtgtacattttaaattcacttttgtaaaaattatcctttcaa |
5575116 |
T |
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| Q |
317 |
gtaaattgaataaagtaaaacatttaagactcgattttttatggactcaaggaaaacatgagaaacagaacaagtt |
392 |
Q |
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| T |
5575115 |
gtaaattgaataaagtaaaacatttaggactcgattttttatggactcaaggaaaacatgagaaacagaacaagtt |
5575040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 8030394 - 8030435
Alignment:
| Q |
225 |
acatacattatttattgaaggaatctaaaagatagatttttg |
266 |
Q |
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| T |
8030394 |
acatacattatttattgaatgaatttaaaagataaatttttg |
8030435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 8506296 - 8506337
Alignment:
| Q |
225 |
acatacattatttattgaaggaatctaaaagatagatttttg |
266 |
Q |
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||||||||||||||||||| |||||||||| ||| ||||||| |
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| T |
8506296 |
acatacattatttattgaatgaatctaaaacataaatttttg |
8506337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 19934717 - 19934758
Alignment:
| Q |
225 |
acatacattatttattgaaggaatctaaaagatagatttttg |
266 |
Q |
| |
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|||||||| |||||||||| |||||||||| ||||||||||| |
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| T |
19934717 |
acatacatcatttattgaatgaatctaaaaaatagatttttg |
19934758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 29006896 - 29006855
Alignment:
| Q |
225 |
acatacattatttattgaaggaatctaaaagatagatttttg |
266 |
Q |
| |
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|||||||| |||||||||| |||||||||| ||||||||||| |
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|
| T |
29006896 |
acatacatcatttattgaatgaatctaaaaaatagatttttg |
29006855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 54164892 - 54164933
Alignment:
| Q |
225 |
acatacattatttattgaaggaatctaaaagatagatttttg |
266 |
Q |
| |
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|||||||| |||||||||| |||||||||| ||||||||||| |
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|
| T |
54164892 |
acatacatcatttattgaatgaatctaaaaaatagatttttg |
54164933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 24369165 - 24369128
Alignment:
| Q |
227 |
atacattatttattgaaggaatctaaaagatagatttt |
264 |
Q |
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||||||||||||||||| |||||||||| ||||||||| |
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| T |
24369165 |
atacattatttattgaatgaatctaaaaaatagatttt |
24369128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 15351794 - 15351835
Alignment:
| Q |
225 |
acatacattatttattgaaggaatctaaaagatagatttttg |
266 |
Q |
| |
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|||||||| |||||||||| |||||||||| ||||||||||| |
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| T |
15351794 |
acatacatcatttattgaatgaatctaaaacatagatttttg |
15351835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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