View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11125_low_19 (Length: 410)

Name: NF11125_low_19
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11125_low_19
NF11125_low_19
[»] chr4 (28 HSPs)
chr4 (126-366)||(2625806-2626050)
chr4 (126-212)||(42640553-42640643)
chr4 (126-214)||(11596295-11596387)
chr4 (160-215)||(18513172-18513227)
chr4 (20-57)||(2626080-2626117)
chr4 (163-212)||(23292926-23292975)
chr4 (128-212)||(37203290-37203371)
chr4 (163-211)||(3947702-3947750)
chr4 (126-213)||(5775303-5775393)
chr4 (126-158)||(6879468-6879500)
chr4 (176-212)||(18844423-18844459)
chr4 (359-402)||(2380687-2380730)
chr4 (177-216)||(3064864-3064903)
chr4 (163-214)||(22234817-22234868)
chr4 (163-210)||(22440559-22440606)
chr4 (168-215)||(53381527-53381574)
chr4 (128-214)||(20633508-20633592)
chr4 (183-212)||(3144587-3144616)
chr4 (169-214)||(24613628-24613673)
chr4 (183-216)||(35161126-35161159)
chr4 (176-212)||(715545-715581)
chr4 (176-212)||(752871-752907)
chr4 (126-158)||(6485614-6485646)
chr4 (168-212)||(8423658-8423702)
chr4 (126-158)||(12797341-12797373)
chr4 (176-212)||(28470448-28470484)
chr4 (126-158)||(29205468-29205500)
chr4 (169-213)||(40784029-40784073)
[»] chr1 (33 HSPs)
chr1 (127-212)||(2218264-2218347)
chr1 (160-210)||(16297223-16297273)
chr1 (126-215)||(22881564-22881651)
chr1 (126-212)||(113323-113412)
chr1 (169-215)||(22947806-22947852)
chr1 (160-210)||(42359391-42359441)
chr1 (150-211)||(10233313-10233374)
chr1 (169-213)||(7918153-7918197)
chr1 (176-212)||(18556385-18556421)
chr1 (163-214)||(9828125-9828176)
chr1 (163-210)||(17778623-17778670)
chr1 (168-211)||(40258874-40258917)
chr1 (163-214)||(40917830-40917881)
chr1 (162-212)||(9630561-9630611)
chr1 (168-214)||(21365990-21366036)
chr1 (126-164)||(24577183-24577221)
chr1 (126-164)||(47989521-47989559)
chr1 (184-213)||(13436534-13436563)
chr1 (176-221)||(15765841-15765886)
chr1 (176-213)||(37598914-37598951)
chr1 (163-207)||(1209823-1209867)
chr1 (126-158)||(1815281-1815313)
chr1 (128-164)||(6612168-6612204)
chr1 (126-158)||(18337353-18337385)
chr1 (168-212)||(22515827-22515871)
chr1 (126-158)||(22515890-22515922)
chr1 (126-166)||(25272506-25272546)
chr1 (176-212)||(32461393-32461429)
chr1 (176-212)||(35702542-35702578)
chr1 (164-212)||(38078601-38078649)
chr1 (126-158)||(40258936-40258968)
chr1 (176-212)||(47989591-47989627)
chr1 (126-158)||(51410049-51410081)
[»] chr6 (26 HSPs)
chr6 (126-211)||(31959183-31959268)
chr6 (126-209)||(9025448-9025529)
chr6 (163-214)||(28715365-28715416)
chr6 (126-212)||(9911482-9911563)
chr6 (128-203)||(21395262-21395341)
chr6 (174-214)||(4878023-4878063)
chr6 (126-212)||(28152122-28152217)
chr6 (127-158)||(32978902-32978933)
chr6 (128-158)||(6898284-6898314)
chr6 (126-164)||(10770671-10770709)
chr6 (126-164)||(16766721-16766759)
chr6 (176-214)||(17327588-17327626)
chr6 (183-212)||(6389822-6389851)
chr6 (128-165)||(7973680-7973717)
chr6 (176-213)||(8805523-8805560)
chr6 (126-158)||(426517-426549)
chr6 (126-158)||(853862-853894)
chr6 (126-158)||(4877967-4877999)
chr6 (168-212)||(7378054-7378098)
chr6 (126-205)||(7930329-7930413)
chr6 (163-215)||(8365445-8365497)
chr6 (183-215)||(8776905-8776937)
chr6 (160-212)||(9107299-9107351)
chr6 (126-158)||(9522915-9522947)
chr6 (176-212)||(32839571-32839607)
chr6 (126-158)||(34595158-34595190)
[»] chr8 (19 HSPs)
chr8 (126-213)||(8342996-8343087)
chr8 (168-212)||(15816058-15816102)
chr8 (126-212)||(25566865-25566949)
chr8 (169-214)||(27213601-27213646)
chr8 (163-212)||(36450694-36450743)
chr8 (126-158)||(24613544-24613576)
chr8 (163-215)||(29510230-29510282)
chr8 (176-212)||(39820511-39820547)
chr8 (163-210)||(44067597-44067644)
chr8 (126-164)||(2572053-2572091)
chr8 (126-212)||(13436910-13436999)
chr8 (162-212)||(22652056-22652106)
chr8 (169-211)||(29447040-29447082)
chr8 (126-158)||(4948676-4948708)
chr8 (168-212)||(17751731-17751775)
chr8 (168-212)||(17760718-17760762)
chr8 (126-158)||(20873093-20873125)
chr8 (184-212)||(24413499-24413527)
chr8 (126-158)||(40332215-40332247)
[»] chr7 (23 HSPs)
chr7 (168-212)||(21880227-21880271)
chr7 (163-212)||(598278-598327)
chr7 (163-215)||(5409768-5409820)
chr7 (162-212)||(1433528-1433578)
chr7 (163-212)||(29763129-29763178)
chr7 (169-214)||(35862027-35862072)
chr7 (163-215)||(9778575-9778627)
chr7 (126-205)||(18215144-18215221)
chr7 (176-212)||(29812598-29812634)
chr7 (126-164)||(2334274-2334312)
chr7 (126-164)||(18039023-18039061)
chr7 (126-164)||(24339666-24339704)
chr7 (163-212)||(6490786-6490835)
chr7 (163-212)||(30813867-30813916)
chr7 (128-213)||(35749922-35750007)
chr7 (163-212)||(43027404-43027453)
chr7 (126-158)||(9408337-9408369)
chr7 (126-158)||(21560527-21560559)
chr7 (168-212)||(24339728-24339772)
chr7 (128-164)||(27945067-27945103)
chr7 (163-211)||(32287404-32287452)
chr7 (168-208)||(40287306-40287346)
chr7 (163-207)||(43250074-43250118)
[»] chr2 (15 HSPs)
chr2 (126-207)||(23058389-23058477)
chr2 (163-215)||(37419824-37419876)
chr2 (169-212)||(10535685-10535728)
chr2 (168-210)||(2438661-2438703)
chr2 (128-158)||(18841016-18841046)
chr2 (164-214)||(37497192-37497242)
chr2 (128-157)||(6940281-6940310)
chr2 (163-212)||(18420363-18420412)
chr2 (163-212)||(26769592-26769641)
chr2 (163-212)||(38117099-38117148)
chr2 (126-158)||(2438722-2438754)
chr2 (126-158)||(18421987-18422019)
chr2 (168-212)||(18840953-18840997)
chr2 (126-158)||(19536400-19536432)
chr2 (184-216)||(21616836-21616868)
[»] scaffold0003 (1 HSPs)
scaffold0003 (163-212)||(241675-241724)
[»] chr5 (21 HSPs)
chr5 (126-214)||(43564905-43565002)
chr5 (183-214)||(7218216-7218247)
chr5 (170-213)||(14873599-14873642)
chr5 (163-212)||(2436981-2437030)
chr5 (176-213)||(10298633-10298670)
chr5 (126-210)||(21190998-21191091)
chr5 (126-158)||(6247646-6247678)
chr5 (183-215)||(6247700-6247732)
chr5 (169-213)||(6326252-6326296)
chr5 (126-158)||(15884012-15884044)
chr5 (176-212)||(17123130-17123166)
chr5 (168-212)||(19820328-19820372)
chr5 (126-158)||(21351908-21351940)
chr5 (128-164)||(21542056-21542092)
chr5 (176-212)||(21576685-21576721)
chr5 (176-212)||(22423764-22423800)
chr5 (126-158)||(33178049-33178081)
chr5 (176-212)||(35017126-35017162)
chr5 (168-212)||(39698627-39698671)
chr5 (126-210)||(41995495-41995581)
chr5 (170-210)||(43001882-43001922)
[»] chr3 (24 HSPs)
chr3 (134-211)||(25211571-25211648)
chr3 (126-210)||(25775533-25775624)
chr3 (163-214)||(41961577-41961628)
chr3 (161-211)||(1389906-1389956)
chr3 (126-164)||(27505270-27505308)
chr3 (162-212)||(34185052-34185102)
chr3 (168-214)||(49651714-49651760)
chr3 (128-212)||(4990912-4991000)
chr3 (163-212)||(27505321-27505370)
chr3 (126-158)||(8587024-8587056)
chr3 (163-215)||(40052382-40052434)
chr3 (126-202)||(1509563-1509643)
chr3 (169-212)||(20503541-20503584)
chr3 (163-210)||(24204983-24205030)
chr3 (182-213)||(27903727-27903758)
chr3 (126-212)||(55401099-55401194)
chr3 (169-215)||(14979225-14979271)
chr3 (168-214)||(40993273-40993319)
chr3 (183-212)||(17276817-17276846)
chr3 (126-159)||(26508134-26508167)
chr3 (126-163)||(28918025-28918062)
chr3 (183-215)||(14209214-14209246)
chr3 (183-211)||(14216993-14217021)
chr3 (183-211)||(14223122-14223150)
[»] scaffold0007 (1 HSPs)
scaffold0007 (163-210)||(225199-225246)
[»] scaffold0009 (1 HSPs)
scaffold0009 (137-205)||(188446-188512)
[»] scaffold0025 (1 HSPs)
scaffold0025 (126-166)||(23794-23834)
[»] scaffold0020 (1 HSPs)
scaffold0020 (126-212)||(135263-135347)
[»] scaffold0168 (2 HSPs)
scaffold0168 (177-215)||(21114-21152)
scaffold0168 (177-215)||(21372-21410)
[»] scaffold0044 (1 HSPs)
scaffold0044 (126-164)||(53204-53242)
[»] scaffold0004 (2 HSPs)
scaffold0004 (169-211)||(92898-92940)
scaffold0004 (126-158)||(123652-123684)
[»] scaffold0475 (1 HSPs)
scaffold0475 (176-213)||(3391-3428)
[»] scaffold0086 (1 HSPs)
scaffold0086 (163-212)||(3009-3058)
[»] scaffold0021 (1 HSPs)
scaffold0021 (126-159)||(130506-130539)
[»] scaffold0793 (1 HSPs)
scaffold0793 (176-212)||(4821-4857)
[»] scaffold0652 (1 HSPs)
scaffold0652 (163-211)||(403-451)
[»] scaffold0236 (1 HSPs)
scaffold0236 (126-166)||(25763-25803)
[»] scaffold0019 (1 HSPs)
scaffold0019 (163-215)||(71806-71858)
[»] scaffold0011 (1 HSPs)
scaffold0011 (126-158)||(17752-17784)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 126 - 366
Target Start/End: Complemental strand, 2626050 - 2625806
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtg-----tgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggtttgaaa 220  Q
    ||||||||||  ||||||||||| ||||||||||| ||     ||| ||||| ||||||| ||||||| | || ||| ||||||||||||||||| |||     
T  2626050 tcacataattcggtgtaattacacgtgtcggtgccatgccgcgtgtccgacatcaggacacgcctaattcaaggagtatccgtgcttcataggtt-gaag 2625952  T
Q  221 cccaaaatctcattcttatgtccataacaatgcaatatgctaagtgtttaaacaagtgaaccaccaaaatttgtgaatagacaaaaacaaactcgaaatt 320  Q
    |||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2625951 cccaaattctcattcttatgtccataacaatacattatgctaagtgtttaaacaagtgaaccaccaaaatttgtaaatagacaaaaacaaactcgaaatt 2625852  T
Q  321 aaaatactgcaataattgacacgtttacaattttaagtaactatca 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2625851 aaaatactgcaataattgacacgtttacaattttaagtaactatca 2625806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 42640553 - 42640643
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgt----gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||||||||| |||||||||||||||||||||| ||     |||| || |||||||||| |||||||||||| ||| ||||||||||||||    
T  42640553 tcacataattcagtgtaattacaagtgtcggtgtcggacacgtgtccggcaccaggacacgcctaatccgaggagtttccgtgcttcatag 42640643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 11596387 - 11596295
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgt----gttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    |||||||||| ||||||||||||||||| |||| |||||    || ||||| | ||||| |||||||| ||| ||||||||||||||||||||    
T  11596387 tcacataattcagtgtaattacaagtgtaggtgtcgtgtcattgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcataggt 11596295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 18513227 - 18513172
Alignment:
Q  160 cgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggtt 215  Q
    ||||||| ||||||||||||| |||||||| ||| |||||||||||||||||||||    
T  18513227 cgtgtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcataggtt 18513172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 2626117 - 2626080
Alignment:
Q  20 gttgagaagtgaaacatcaaaagtagggttgaaaccta 57  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2626117 gttgagaagtgaaacatcaaaagtagggttgaaaccta 2626080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 23292975 - 23292926
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||| ||||||| ||||| |||||||||||| ||||||||||||||||||    
T  23292975 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 37203290 - 37203371
Alignment:
Q  128 acataattaagtgtaattacaagtgtcggtgccgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||||||| ||||||||||||||||| | || || ||   ||||||| ||||| | |||||||||||||||||||||||||||||    
T  37203290 acataatttagtgtaattacaagtgtag-tgtcgggtc--cgacaccgggacacgtctaatccgagaagtgtccgtgcttcatag 37203371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 3947750 - 3947702
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcata 211  Q
    |||| |||||||||||||  ||||||||||| |||||||||||||||||    
T  3947750 gtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 5775393 - 5775303
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgt---gttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatagg 213  Q
    ||||||||||||||||||||| | ||||||||| | |||   || |  | || ||||| |||||||||||| |||||||||||||||||||    
T  5775393 tcacataattaagtgtaattatatgtgtcggtgtcatgtcgtgtccaccgccgggacacgcctaatccgaggagtgtccgtgcttcatagg 5775303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 6879500 - 6879468
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||||||||||||||||||||||||||    
T  6879500 tcacataattaagtgtaattacaagtgtcggtg 6879468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 18844459 - 18844423
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| |||||||||||||||||||||||||||||||    
T  18844459 ggacacgcctaatccgagaagtgtccgtgcttcatag 18844423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 402
Target Start/End: Complemental strand, 2380730 - 2380687
Alignment:
Q  359 aactatcactatggagtatcattatcatctaagttattcttctc 402  Q
    |||||| |||||| |||||||||| |||||||||||||||||||    
T  2380730 aactatgactatgcagtatcattaccatctaagttattcttctc 2380687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 3064903 - 3064864
Alignment:
Q  177 gacaagcctaatccgagaagtgtccgtgcttcataggttt 216  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  3064903 gacacgcctaatccgaggagtgtccgtgcttcataggttt 3064864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 22234868 - 22234817
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    |||| |||||||||||||   |||||||||||||||| ||||||||||||||    
T  22234868 gtgtccgacaccaggacacagctaatccgagaagtgttcgtgcttcataggt 22234817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 22440606 - 22440559
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcat 210  Q
    |||| |||||| |||||| |||||||||||| ||||||||||||||||    
T  22440606 gtgtccgacactaggacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 53381574 - 53381527
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggtt 215  Q
    ||||||| |||||  ||||||||||| |||||||||||||||||||||    
T  53381574 cgacaccgggacacacctaatccgaggagtgtccgtgcttcataggtt 53381527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 20633508 - 20633592
Alignment:
Q  128 acataattaagtgtaattacaagtgtcggtgccgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    |||||||| | ||||||||||||||||| || || ||||  ||||||| |||| ||||||||| || ||||| ||||||||||||||    
T  20633508 acataattcaatgtaattacaagtgtcg-tgtcg-gtgtcggacaccaagacacgcctaatccaaggagtgttcgtgcttcataggt 20633592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 212
Target Start/End: Complemental strand, 3144616 - 3144587
Alignment:
Q  183 cctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||||||||||||||||||||||||||    
T  3144616 cctaatccgagaagtgtccgtgcttcatag 3144587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 24613673 - 24613628
Alignment:
Q  169 gacaccaggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    |||||||||||| | ||||||| || ||||||||||||||||||||    
T  24613673 gacaccaggacacgtctaatcctaggagtgtccgtgcttcataggt 24613628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 35161126 - 35161159
Alignment:
Q  183 cctaatccgagaagtgtccgtgcttcataggttt 216  Q
    |||||||||| |||||||||||||||||||||||    
T  35161126 cctaatccgaaaagtgtccgtgcttcataggttt 35161159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 715581 - 715545
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  715581 ggacacgcctaatccgaggagtgtccgtgcttcatag 715545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 752907 - 752871
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  752907 ggacacgcctaatccgaggagtgtccgtgcttcatag 752871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 6485646 - 6485614
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  6485646 tcacataatttagtgtaattacaagtgtcggtg 6485614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 8423702 - 8423658
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||| ||||| |||||||| ||||||||||||||| ||||||    
T  8423702 cgacaccgggacacgcctaatcggagaagtgtccgtgcgtcatag 8423658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 12797373 - 12797341
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  12797373 tcacataattcagtgtaattacaagtgtcggtg 12797341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 28470448 - 28470484
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  28470448 ggacatgcctaatccgaggagtgtccgtgcttcatag 28470484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 29205468 - 29205500
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  29205468 tcacataattcagtgtaattacaagtgtcggtg 29205500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 40784029 - 40784073
Alignment:
Q  169 gacaccaggacaagcctaatccgagaagtgtccgtgcttcatagg 213  Q
    |||||| |||||  ||||||||||| |||||||||||||||||||    
T  40784029 gacaccgggacacacctaatccgaggagtgtccgtgcttcatagg 40784073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 2218264 - 2218347
Alignment:
Q  127 cacataattaagtgtaattacaagtgtcggtgccgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||||| |||||||||||||||||||||| |  |||| |||||| |||||| |||||||| ||| ||||||||||||||||||    
T  2218264 cacataatttagtgtaattacaagtgtcggtgtc--gtgtccgacactaggacacgcctaatctgaggagtgtccgtgcttcatag 2218347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 16297273 - 16297223
Alignment:
Q  160 cgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcat 210  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||||||||    
T  16297273 cgtgtgtccgacaccaggacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 22881651 - 22881564
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggtt 215  Q
    |||||||||| |||||||||||||||||||||| ||      ||||||| ||||| | |||||||||| |||||||||||||||||||||    
T  22881651 tcacataatttagtgtaattacaagtgtcggtgtcggaca--cgacaccgggacacgtctaatccgaggagtgtccgtgcttcataggtt 22881564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 113323 - 113412
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgt---gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||||||||| ||||||||||||||||| |||| |||   |||| | ||||| ||||| |||||||||||| |||| || ||||||||||    
T  113323 tcacataattcagtgtaattacaagtgtaggtgtcgtgtcgtgtccaacaccgggacacgcctaatccgaggagtgcccatgcttcatag 113412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 22947806 - 22947852
Alignment:
Q  169 gacaccaggacaagcctaatccgagaagtgtccgtgcttcataggtt 215  Q
    |||||| ||||| |||||||||||| |||||||||||||||||||||    
T  22947806 gacacctggacacgcctaatccgaggagtgtccgtgcttcataggtt 22947852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 42359441 - 42359391
Alignment:
Q  160 cgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcat 210  Q
    ||||||| ||||||| ||||| |||||||||||| ||||||||||||||||    
T  42359441 cgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 10233313 - 10233374
Alignment:
Q  150 gtgtcggtgccgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcata 211  Q
    ||||||||| | ||||| |||||||||||||  ||||||| ||| |||||||||||||||||    
T  10233313 gtgtcggtgtcatgtgtccgacaccaggacacacctaatcagaggagtgtccgtgcttcata 10233374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 7918197 - 7918153
Alignment:
Q  169 gacaccaggacaagcctaatccgagaagtgtccgtgcttcatagg 213  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||    
T  7918197 gacaccaggacacacctaatccgaggagtgtccgtgcttcatagg 7918153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 18556421 - 18556385
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| |||||||||||||||||||||||||||||||    
T  18556421 ggacacgcctaatccgagaagtgtccgtgcttcatag 18556385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 9828125 - 9828176
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    |||| ||||||| ||||| | |||||||||| ||||||||||||||||||||    
T  9828125 gtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcataggt 9828176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 17778623 - 17778670
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcat 210  Q
    |||| ||||||| ||||| |||||||||||||||||| ||||||||||    
T  17778623 gtgtccgacaccgggacatgcctaatccgagaagtgttcgtgcttcat 17778670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 40258917 - 40258874
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcata 211  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||    
T  40258917 cgacaccaggacacgcctaatccgaggagtgtccatgcttcata 40258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 40917830 - 40917881
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    |||| ||||||| ||||| |||||||||||| | ||||||||||||||||||    
T  40917830 gtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcataggt 40917881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 9630611 - 9630561
Alignment:
Q  162 tgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||| |||| |||||| |||||||||||| ||||| ||||||||||||    
T  9630611 tgtgttcaacacgaggacacgcctaatccgaggagtgttcgtgcttcatag 9630561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 21366036 - 21365990
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    |||||||  |||| |||||||||||| ||||||||||||||||||||    
T  21366036 cgacaccgagacacgcctaatccgaggagtgtccgtgcttcataggt 21365990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 24577221 - 24577183
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgt 164  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  24577221 tcacataattcagtgtaattacaagtgtcggtgtcgtgt 24577183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 47989521 - 47989559
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgt 164  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  47989521 tcacataattcagtgtaattacaagtgtcggtgtcgtgt 47989559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 13436534 - 13436563
Alignment:
Q  184 ctaatccgagaagtgtccgtgcttcatagg 213  Q
    ||||||||||||||||||||||||||||||    
T  13436534 ctaatccgagaagtgtccgtgcttcatagg 13436563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 15765841 - 15765886
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcataggtttgaaac 221  Q
    ||||| |||||||||||  ||||||||||||||||||||| |||||    
T  15765841 ggacacgcctaatccgaagagtgtccgtgcttcataggttagaaac 15765886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 37598914 - 37598951
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatagg 213  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  37598914 ggacacgcctaatccgaggagtgtccgtgcttcatagg 37598951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 1209823 - 1209867
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgctt 207  Q
    |||| |||||||||||||  ||||||||||||||||| |||||||    
T  1209823 gtgtccgacaccaggacacacctaatccgagaagtgttcgtgctt 1209867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 1815281 - 1815313
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  1815281 tcacataattcagtgtaattacaagtgtcggtg 1815313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 6612204 - 6612168
Alignment:
Q  128 acataattaagtgtaattacaagtgtcggtgccgtgt 164  Q
    |||||||| |||||||||||||||||||||| |||||    
T  6612204 acataattcagtgtaattacaagtgtcggtgtcgtgt 6612168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 18337353 - 18337385
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  18337353 tcacataattcagtgtaattacaagtgtcggtg 18337385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 22515871 - 22515827
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||||||  |||| |||||||||||| ||||||||||||||||||    
T  22515871 cgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 22515827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 22515922 - 22515890
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  22515922 tcacataatttagtgtaattacaagtgtcggtg 22515890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 25272506 - 25272546
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgtgt 166  Q
    |||||||||| |||||||||| ||||||||||| |||||||    
T  25272506 tcacataatttagtgtaattataagtgtcggtgtcgtgtgt 25272546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 32461429 - 32461393
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  32461429 ggacacgcctaatccaagaagtgtccgtgcttcatag 32461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 35702578 - 35702542
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  35702578 ggacacgcctaatccgaggagtgtccgtgcttcatag 35702542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 38078649 - 38078601
Alignment:
Q  164 tgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| ||||||||||| |||||||||||| ||| | ||||||||||||    
T  38078649 tgttcaacaccaggacacgcctaatccgaggagtattcgtgcttcatag 38078601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 40258968 - 40258936
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  40258968 tcacataattcagtgtaattacaagtgtcggtg 40258936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 47989591 - 47989627
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  47989591 ggacacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 51410049 - 51410081
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  51410049 tcacataattcagtgtaattacaagtgtcggtg 51410081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 31959183 - 31959268
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcata 211  Q
    |||||||||  |||||||||||||||||||| | | ||||| ||||||| |||||  ||||||||||| |||||||||||||||||    
T  31959183 tcacataatgcagtgtaattacaagtgtcggcgacatgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 31959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 9025529 - 9025448
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttca 209  Q
    |||||||||| |||||||||| | ||||||||| |||||   ||||||| ||||| ||||||||||||||||||||||||||||    
T  9025529 tcacataattcagtgtaattatatgtgtcggtgtcgtgtc--cgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 28715365 - 28715416
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    |||||||||||| ||||| ||||||| |||||||||| ||||||||||||||    
T  28715365 gtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcataggt 28715416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 9911563 - 9911482
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||||||||| |||||||||||||||||||||| |||||       ||||||||| |||||||||||| ||||| | ||||||||||    
T  9911563 tcacataattcagtgtaattacaagtgtcggtgtcgtgt-----caaccaggacacgcctaatccgaggagtgttcatgcttcatag 9911482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 21395341 - 21395262
Alignment:
Q  128 acataattaagtgtaattacaagtgtcggtgccgtgt----gttcgacaccaggacaagcctaatccgagaagtgtccgt 203  Q
    |||||||| |||||||||||||||||||||| |||||    ||  |||||||||||| ||||||||| || |||||||||    
T  21395341 acataatttagtgtaattacaagtgtcggtgtcgtgtcagtgtcggacaccaggacacgcctaatccaaggagtgtccgt 21395262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 4878023 - 4878063
Alignment:
Q  174 caggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    ||||||| |||||||||||| ||||||||||||||||||||    
T  4878023 caggacacgcctaatccgaggagtgtccgtgcttcataggt 4878063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 28152122 - 28152217
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgt---------gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||||||||| |||||||||||||||||||||| ||          |||| ||||||| ||||| |||||||||||| ||||| ||||||||||||    
T  28152122 tcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatag 28152217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 158
Target Start/End: Complemental strand, 32978933 - 32978902
Alignment:
Q  127 cacataattaagtgtaattacaagtgtcggtg 158  Q
    ||||||||||||||||||||||||||||||||    
T  32978933 cacataattaagtgtaattacaagtgtcggtg 32978902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 158
Target Start/End: Complemental strand, 6898314 - 6898284
Alignment:
Q  128 acataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||||||||||||||||||||||||    
T  6898314 acataattaagtgtaattacaagtgtcggtg 6898284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 10770709 - 10770671
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgt 164  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  10770709 tcacataattcagtgtaattacaagtgtcggtgtcgtgt 10770671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 16766721 - 16766759
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgt 164  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  16766721 tcacataattcagtgtaattacaagtgtcggtgtcgtgt 16766759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 17327626 - 17327588
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  17327626 ggacacgcctaatccgaggagtgtccgtgcttcataggt 17327588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 212
Target Start/End: Original strand, 6389822 - 6389851
Alignment:
Q  183 cctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||||||||||||||||||||||||||    
T  6389822 cctaatccgagaagtgtccgtgcttcatag 6389851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 7973680 - 7973717
Alignment:
Q  128 acataattaagtgtaattacaagtgtcggtgccgtgtg 165  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  7973680 acataattaagtgtaattataagtgtcggtgtcgtgtg 7973717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 8805560 - 8805523
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatagg 213  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  8805560 ggacatgcctaatccgaggagtgtccgtgcttcatagg 8805523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 426549 - 426517
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||||| ||||||||||||||||||||    
T  426549 tcacataattaaatgtaattacaagtgtcggtg 426517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 853894 - 853862
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    ||||||||||||||| |||||||||||||||||    
T  853894 tcacataattaagtgcaattacaagtgtcggtg 853862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 4877967 - 4877999
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||||||| ||||||||||||||||||    
T  4877967 tcacataattaagtataattacaagtgtcggtg 4877999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 7378054 - 7378098
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||| ||||| | |||||| ||||||||||||||||||||||    
T  7378054 cgacaccgggacacggctaatctgagaagtgtccgtgcttcatag 7378098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 7930329 - 7930413
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgt-----gttcgacaccaggacaagcctaatccgagaagtgtccgtgc 205  Q
    |||||||||| |||| |||| |||||||||||| |||||     || ||||||||||||| ||||||| |||| ||||| |||||    
T  7930329 tcacataatttagtgaaatttcaagtgtcggtgtcgtgtcacgtgtccgacaccaggacacgcctaattcgaggagtgttcgtgc 7930413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 8365497 - 8365445
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggtt 215  Q
    |||| ||||||  ||||| |||||||||||| ||| |||||||||||||||||    
T  8365497 gtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcataggtt 8365445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 8776937 - 8776905
Alignment:
Q  183 cctaatccgagaagtgtccgtgcttcataggtt 215  Q
    ||||||||||| |||||||||||||||||||||    
T  8776937 cctaatccgaggagtgtccgtgcttcataggtt 8776905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 9107351 - 9107299
Alignment:
Q  160 cgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||| ||||||| |||||  ||||||||||| |||| |||||||||||||    
T  9107351 cgtgtgtccgacaccgggacacacctaatccgaggagtgcccgtgcttcatag 9107299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 9522915 - 9522947
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  9522915 tcacataattcagtgtaattacaagtgtcggtg 9522947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 32839607 - 32839571
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  32839607 ggacacgcctaatccgagaagtgtctgtgcttcatag 32839571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 34595158 - 34595190
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  34595158 tcacataattcagtgtaattacaagtgtcggtg 34595190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 8342996 - 8343087
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccg----tgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatagg 213  Q
    |||||||||| |||||||||||||||||||||| ||    ||||| ||||||| ||||| |||||||||||  |||||| ||||||||||||    
T  8342996 tcacataatttagtgtaattacaagtgtcggtgtcgtacatgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatagg 8343087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 15816102 - 15816058
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||    
T  15816102 cgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 15816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 25566865 - 25566949
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||||||||| |||||||||||||||||||||| |  ||||| |   || ||||| |||||||||||| |||||| |||||||||||    
T  25566865 tcacataattcagtgtaattacaagtgtcggtgtc--gtgttggtgtccgggacacgcctaatccgaggagtgtctgtgcttcatag 25566949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 27213601 - 27213646
Alignment:
Q  169 gacaccaggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    |||||| ||||| | |||||||||||||||||||||||||||||||    
T  27213601 gacaccgggacacggctaatccgagaagtgtccgtgcttcataggt 27213646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 36450743 - 36450694
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||| ||||||||||||| |||||||||||| |||||| |||||||||||    
T  36450743 gtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 24613544 - 24613576
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||||||||||||||||||||||||||    
T  24613544 tcacataattaagtgtaattacaagtgtcggtg 24613576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 29510282 - 29510230
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggtt 215  Q
    |||| ||||||| |||||  ||||||||||| |||||||||||||||||||||    
T  29510282 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcataggtt 29510230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 39820511 - 39820547
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| |||||||||||||||||||||||||||||||    
T  39820511 ggacacgcctaatccgagaagtgtccgtgcttcatag 39820547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 44067597 - 44067644
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcat 210  Q
    |||| ||||||||||||| ||||||| |||| ||||||||||||||||    
T  44067597 gtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 44067644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 2572091 - 2572053
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgt 164  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  2572091 tcacataatttagtgtaattacaagtgtcggtgtcgtgt 2572053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 13436999 - 13436910
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgt--gt-tcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||||||||| |  ||||| ||||||||||||| |||||  || |||||||| ||||| ||||||||| || |||||| |||||||||||    
T  13436999 tcacataattcatggtaataacaagtgtcggtgtcgtgtcggtgtcgacaccgggacacgcctaatccaaggagtgtctgtgcttcatag 13436910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 22652056 - 22652106
Alignment:
Q  162 tgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| ||||||| ||||| | |||||||||| ||||||||||||||||||    
T  22652056 tgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 29447082 - 29447040
Alignment:
Q  169 gacaccaggacaagcctaatccgagaagtgtccgtgcttcata 211  Q
    |||||||||||| ||||||||| || |||||||||||||||||    
T  29447082 gacaccaggacacgcctaatcctaggagtgtccgtgcttcata 29447040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 4948676 - 4948708
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  4948676 tcacataattcagtgtaattacaagtgtcggtg 4948708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 17751731 - 17751775
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||| ||||| |||||||||||| |||||||| |||||||||    
T  17751731 cgacaccgggacacgcctaatccgaggagtgtccgcgcttcatag 17751775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 17760718 - 17760762
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||| ||||| |||||||||||| |||||||| |||||||||    
T  17760718 cgacaccgggacacgcctaatccgaggagtgtccgcgcttcatag 17760762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 20873093 - 20873125
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  20873093 tcacataatttagtgtaattacaagtgtcggtg 20873125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 212
Target Start/End: Complemental strand, 24413527 - 24413499
Alignment:
Q  184 ctaatccgagaagtgtccgtgcttcatag 212  Q
    |||||||||||||||||||||||||||||    
T  24413527 ctaatccgagaagtgtccgtgcttcatag 24413499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 40332215 - 40332247
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  40332215 tcacataattcagtgtaattacaagtgtcggtg 40332247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 21880227 - 21880271
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  21880227 cgacaccaggacacgcctaatccgagaagtgtccgtgcttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 598278 - 598327
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||| ||||||| ||||| |||||||||||||||||||||||||||||||    
T  598278 gtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 5409820 - 5409768
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggtt 215  Q
    |||| ||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  5409820 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggtt 5409768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 1433528 - 1433578
Alignment:
Q  162 tgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| ||||||||||||| | |||||||||| ||||||||||||||||||    
T  1433528 tgtgtccgacaccaggacacgtctaatccgaggagtgtccgtgcttcatag 1433578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 29763178 - 29763129
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||| ||||| ||||||| |||||||||||| ||||||||||||||||||    
T  29763178 gtgtccgacatcaggacacgcctaatccgaggagtgtccgtgcttcatag 29763129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 35862027 - 35862072
Alignment:
Q  169 gacaccaggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||||    
T  35862027 gacacgaggacacgcctaatccgaggagtgtccgtgcttcataggt 35862072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 9778575 - 9778627
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggtt 215  Q
    |||| ||||||| ||||| ||||||||| || |||||||||||||||||||||    
T  9778575 gtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcataggtt 9778627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 18215221 - 18215144
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgc 205  Q
    |||||||||  |||||| ||||||||||||||| |||||   ||||||| ||||| |||||||| ||| |||||||||||    
T  18215221 tcacataatgcagtgtagttacaagtgtcggtgtcgtgtc--cgacaccgggacacgcctaatctgaggagtgtccgtgc 18215144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 29812634 - 29812598
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| |||||||||||||||||||||||||||||||    
T  29812634 ggacacgcctaatccgagaagtgtccgtgcttcatag 29812598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 2334274 - 2334312
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgt 164  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  2334274 tcacataatttagtgtaattacaagtgtcggtgtcgtgt 2334312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 18039023 - 18039061
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgt 164  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  18039023 tcacataattcagtgtaattacaagtgtcggtgtcgtgt 18039061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 24339666 - 24339704
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgt 164  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  24339666 tcacataattcagtgtaattacaagtgtcggtgtcgtgt 24339704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 6490786 - 6490835
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||| ||||||| ||||| || ||||||||| ||||||||||||||||||    
T  6490786 gtgtccgacaccgggacacgcttaatccgaggagtgtccgtgcttcatag 6490835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 30813867 - 30813916
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||| ||||| ||| ||| |||||||||||| ||||||||||||||||||    
T  30813867 gtgtccgacatcagaacacgcctaatccgaggagtgtccgtgcttcatag 30813916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 35749922 - 35750007
Alignment:
Q  128 acataattaagtgtaattacaagtgtcggtgccgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatagg 213  Q
    |||| ||| |||||||||  ||||||||||| ||||||| ||| ||| |||||  |||| || ||| |||||| ||||||||||||    
T  35749922 acattattcagtgtaattgtaagtgtcggtgtcgtgtgtccgaaaccgggacacacctagtcggaggagtgtctgtgcttcatagg 35750007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 43027453 - 43027404
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||| ||||||| ||||| |||||||||||  ||||||||||||||||||    
T  43027453 gtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 9408369 - 9408337
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  9408369 tcacataatttagtgtaattacaagtgtcggtg 9408337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 21560527 - 21560559
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  21560527 tcacataattcagtgtaattacaagtgtcggtg 21560559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 24339728 - 24339772
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||| ||||| |||||||||||| |||| |||||||||||||    
T  24339728 cgacaccgggacacgcctaatccgaggagtgcccgtgcttcatag 24339772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 27945067 - 27945103
Alignment:
Q  128 acataattaagtgtaattacaagtgtcggtgccgtgt 164  Q
    |||||||| |||||||||||||||||||||| |||||    
T  27945067 acataattcagtgtaattacaagtgtcggtgtcgtgt 27945103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 32287452 - 32287404
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcata 211  Q
    |||| ||||||| |||||  ||||||||||| |||||||||||||||||    
T  32287452 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 40287346 - 40287306
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttc 208  Q
    ||||||| ||||| |||||||||||| ||||||||||||||    
T  40287346 cgacaccgggacatgcctaatccgaggagtgtccgtgcttc 40287306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 43250074 - 43250118
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgctt 207  Q
    |||| ||||||||||||| ||||||| |||| |||||||||||||    
T  43250074 gtgtccgacaccaggacacgcctaattcgaggagtgtccgtgctt 43250118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 23058477 - 23058389
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgt-------gttcgacaccaggacaagcctaatccgagaagtgtccgtgctt 207  Q
    |||||||||  |||||||||||||||||||||| |||||       || ||||||| ||||| ||||||||||||||||||||||||||    
T  23058477 tcacataatccagtgtaattacaagtgtcggtgtcgtgtcggtgttgtccgacaccgggacacgcctaatccgagaagtgtccgtgctt 23058389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 37419824 - 37419876
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggtt 215  Q
    |||| ||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  37419824 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggtt 37419876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 10535728 - 10535685
Alignment:
Q  169 gacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||||||||||| |||||||||||| ||||| ||||||||||||    
T  10535728 gacaccaggacacgcctaatccgaggagtgttcgtgcttcatag 10535685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 2438703 - 2438661
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcat 210  Q
    ||||||| ||||| |||||||||||| ||||||||||||||||    
T  2438703 cgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 158
Target Start/End: Complemental strand, 18841046 - 18841016
Alignment:
Q  128 acataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||||||||||||||||||||||||    
T  18841046 acataattaagtgtaattacaagtgtcggtg 18841016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 37497192 - 37497242
Alignment:
Q  164 tgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    |||||| |||| ||||| | ||||||| |||||||||||||||||||||||    
T  37497192 tgttcggcaccgggacatggctaatcccagaagtgtccgtgcttcataggt 37497242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 6940281 - 6940310
Alignment:
Q  128 acataattaagtgtaattacaagtgtcggt 157  Q
    ||||||||||||||||||||||||||||||    
T  6940281 acataattaagtgtaattacaagtgtcggt 6940310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 18420412 - 18420363
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||||||  | |||| ||||||||||||||||||| |||||||||||    
T  18420412 gtgttcgacattatgacacgcctaatccgagaagtgtctgtgcttcatag 18420363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 26769592 - 26769641
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||| ||||||  ||||| |||||||||||| ||||||||||||||||||    
T  26769592 gtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 26769641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 38117148 - 38117099
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||| ||||||| ||||| ||||||||||||  |||||||||||||||||    
T  38117148 gtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcatag 38117099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 2438754 - 2438722
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  2438754 tcacataattcagtgtaattacaagtgtcggtg 2438722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 18421987 - 18422019
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  18421987 tcacataattcagtgtaattacaagtgtcggtg 18422019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 18840997 - 18840953
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||| |||||  ||||||||||| ||||||||||||||||||    
T  18840997 cgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 18840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 19536432 - 19536400
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  19536432 tcacataattcagtgtaattacaagtgtcggtg 19536400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 21616836 - 21616868
Alignment:
Q  184 ctaatccgagaagtgtccgtgcttcataggttt 216  Q
    ||||||| |||||||||||||||||||||||||    
T  21616836 ctaatccaagaagtgtccgtgcttcataggttt 21616868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 241675 - 241724
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||| ||||||| ||||| |||||||||||||||||||||||||||||||    
T  241675 gtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 43564905 - 43565002
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccg---------tgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    |||||||||| |||||||||| ||||||||||| ||         ||||| |||| || ||||| |||||||||||||||||||||||||||||||||    
T  43564905 tcacataatttagtgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcataggt 43565002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 214
Target Start/End: Complemental strand, 7218247 - 7218216
Alignment:
Q  183 cctaatccgagaagtgtccgtgcttcataggt 214  Q
    ||||||||||||||||||||||||||||||||    
T  7218247 cctaatccgagaagtgtccgtgcttcataggt 7218216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 14873599 - 14873642
Alignment:
Q  170 acaccaggacaagcctaatccgagaagtgtccgtgcttcatagg 213  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||    
T  14873599 acaccgggacacgcctaatccgaggagtgtccgtgcttcatagg 14873642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 2436981 - 2437030
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||| |||||||| |||| |||||||||||| ||||| ||||||||||||    
T  2436981 gtgtccgacaccaagacacgcctaatccgaggagtgttcgtgcttcatag 2437030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 10298633 - 10298670
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatagg 213  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  10298633 ggacacgcctaatccgaggagtgtccgtgcttcatagg 10298670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 21191091 - 21190998
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccg---------tgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcat 210  Q
    |||||||||| |||||||||||||||||||||| ||          |||| |||| || ||||| |||||||||||| ||||||||||||||||    
T  21191091 tcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 6247646 - 6247678
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  6247646 tcacataattcagtgtaattacaagtgtcggtg 6247678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 6247700 - 6247732
Alignment:
Q  183 cctaatccgagaagtgtccgtgcttcataggtt 215  Q
    |||||||||||||||||| ||||||||||||||    
T  6247700 cctaatccgagaagtgtctgtgcttcataggtt 6247732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 6326296 - 6326252
Alignment:
Q  169 gacaccaggacaagcctaatccgagaagtgtccgtgcttcatagg 213  Q
    |||||| | ||| ||||||| ||||||||||||||||||||||||    
T  6326296 gacaccggaacacgcctaattcgagaagtgtccgtgcttcatagg 6326252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 15884012 - 15884044
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  15884012 tcacataattcagtgtaattacaagtgtcggtg 15884044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 17123130 - 17123166
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  17123130 ggacacgcctaatccgaggagtgtccgtgcttcatag 17123166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 19820372 - 19820328
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||| ||||| |||||||| ||| ||||||||||||||||||    
T  19820372 cgacaccgggacacgcctaatcagaggagtgtccgtgcttcatag 19820328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 21351940 - 21351908
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  21351940 tcacataattcagtgtaattacaagtgtcggtg 21351908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 21542056 - 21542092
Alignment:
Q  128 acataattaagtgtaattacaagtgtcggtgccgtgt 164  Q
    |||||||| |||||||||||||||||||||| |||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcgtgt 21542092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 21576721 - 21576685
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  21576721 ggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 22423800 - 22423764
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  22423800 ggacacgcctaatccgaggagtgtccgtgcttcatag 22423764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 33178049 - 33178081
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  33178049 tcacataatttagtgtaattacaagtgtcggtg 33178081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 35017126 - 35017162
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  35017126 ggacacgcctaatccgaggagtgtccgtgcttcatag 35017162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 39698627 - 39698671
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||||||  |||| |||||||||||| ||||||||||||||||||    
T  39698627 cgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 39698671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 41995495 - 41995581
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgt----gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcat 210  Q
    |||||||||| | ||||||||  ||||||||||||||    ||||  ||||| |||||| ||||||||| || ||||||||||||||||    
T  41995495 tcacataattcaatgtaatta--agtgtcggtgccgtatcggtgtcggacacgaggacacgcctaatcctaggagtgtccgtgcttcat 41995581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 43001882 - 43001922
Alignment:
Q  170 acaccaggacaagcctaatccgagaagtgtccgtgcttcat 210  Q
    ||||| ||||| |||||||||||| ||||||||||||||||    
T  43001882 acacctggacacgcctaatccgaggagtgtccgtgcttcat 43001922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 25211571 - 25211648
Alignment:
Q  134 ttaagtgtaattacaagtgtcggtgccgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcata 211  Q
    ||||||||||||| | ||||||||| |||||   ||||||||||||| |||||||| |||||||||  ||||||||||    
T  25211571 ttaagtgtaattatatgtgtcggtgtcgtgtccccgacaccaggacacgcctaatctgagaagtgtttgtgcttcata 25211648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 25775533 - 25775624
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgt-------gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcat 210  Q
    |||||||||| |||||||||||||||||||||| ||        |||| ||||||||||||| |||||||||||| ||||| ||||||||||    
T  25775533 tcacataattcagtgtaattacaagtgtcggtgtcggacacgtcgtgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 41961628 - 41961577
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    |||| ||||||  ||||| |||||||||||||||||||||||||||||||||    
T  41961628 gtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcataggt 41961577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 1389906 - 1389956
Alignment:
Q  161 gtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcata 211  Q
    |||||| ||||||||||||| ||||||||| || |||||||||||||||||    
T  1389906 gtgtgtccgacaccaggacatgcctaatccaaggagtgtccgtgcttcata 1389956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 27505270 - 27505308
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgt 164  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  27505270 tcacataattaagtgtaattacaagtgtcggtgtcgtgt 27505308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 34185102 - 34185052
Alignment:
Q  162 tgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| ||||||| ||||| |||||||||||| ||||||||||||||||||    
T  34185102 tgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 49651760 - 49651714
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||    
T  49651760 cgacaccgggacacacctaatccgagaagtgtccgtgcttcataggt 49651714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 4991000 - 4990912
Alignment:
Q  128 acataattaagtgtaattacaagtgtcggtgccgtgt--gt-tc-gacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||||||| |||||||||||||||||||| | |||||  || || |||||  ||||| |||||||||||| ||||||||||||||||||    
T  4991000 acataattcagtgtaattacaagtgtcggcgtcgtgttggtatcagacacgtggacacgcctaatccgaggagtgtccgtgcttcatag 4990912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 27505321 - 27505370
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||| ||||||| ||||| |||||||||||| ||||||||||||||||||    
T  27505321 gtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 8587056 - 8587024
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||||||||||||||||||||||||||    
T  8587056 tcacataattaagtgtaattacaagtgtcggtg 8587024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 40052382 - 40052434
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggtt 215  Q
    |||| ||||||| ||||| |||||||||||| ||||| |||||||||||||||    
T  40052382 gtgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcataggtt 40052434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 1509563 - 1509643
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgt----gtgttcgacaccaggacaagcctaatccgagaagtgtccg 202  Q
    |||||||||| |||||||||||||||||||||| |||    |||| ||||||| | ||| |||||||| ||| ||||||||    
T  1509563 tcacataatttagtgtaattacaagtgtcggtgtcgtttcggtgtccgacaccggtacacgcctaatcggaggagtgtccg 1509643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 20503541 - 20503584
Alignment:
Q  169 gacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||||| ||||| |||||||||||| ||||||||||||||||||    
T  20503541 gacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 20503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 24205030 - 24204983
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcat 210  Q
    |||| ||||||||||||| ||||||| |||| ||||||||||||||||    
T  24205030 gtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 24204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 213
Target Start/End: Original strand, 27903727 - 27903758
Alignment:
Q  182 gcctaatccgagaagtgtccgtgcttcatagg 213  Q
    ||||||||||||||||||||||||||||||||    
T  27903727 gcctaatccgagaagtgtccgtgcttcatagg 27903758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 55401099 - 55401194
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgt---------gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||||||||| |||||||||||||||||||||| ||          |||| |||||||  |||| |||||||||||| ||||||||||||||||||    
T  55401099 tcacataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 14979225 - 14979271
Alignment:
Q  169 gacaccaggacaagcctaatccgagaagtgtccgtgcttcataggtt 215  Q
    |||||| ||||| |||||| ||||| |||||||||||||||||||||    
T  14979225 gacaccgggacacgcctaacccgaggagtgtccgtgcttcataggtt 14979271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 40993319 - 40993273
Alignment:
Q  168 cgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggt 214  Q
    ||||||| ||||| |||||||||||| ||||||| ||||||||||||    
T  40993319 cgacaccgggacacgcctaatccgaggagtgtccatgcttcataggt 40993273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 212
Target Start/End: Original strand, 17276817 - 17276846
Alignment:
Q  183 cctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||||||||||||||||||||||||||    
T  17276817 cctaatccgagaagtgtccgtgcttcatag 17276846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 26508134 - 26508167
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgc 159  Q
    |||||||||| |||||||||||||||||||||||    
T  26508134 tcacataattcagtgtaattacaagtgtcggtgc 26508167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 28918025 - 28918062
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtg 163  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  28918025 tcacataattcagtgtaattacaagtgtcggtgtcgtg 28918062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 14209214 - 14209246
Alignment:
Q  183 cctaatccgagaagtgtccgtgcttcataggtt 215  Q
    |||||||| ||||||||||||||||||||||||    
T  14209214 cctaatccaagaagtgtccgtgcttcataggtt 14209246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 14216993 - 14217021
Alignment:
Q  183 cctaatccgagaagtgtccgtgcttcata 211  Q
    |||||||||||||||||||||||||||||    
T  14216993 cctaatccgagaagtgtccgtgcttcata 14217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 14223122 - 14223150
Alignment:
Q  183 cctaatccgagaagtgtccgtgcttcata 211  Q
    |||||||||||||||||||||||||||||    
T  14223122 cctaatccgagaagtgtccgtgcttcata 14223150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 225246 - 225199
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcat 210  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  225246 gtgttcgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 225199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 188446 - 188512
Alignment:
Q  137 agtgtaattacaagtgtcggtgccgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgc 205  Q
    |||||||| ||||||||||||| ||| |   ||||||||||||| |||||||||||| |||||||||||    
T  188446 agtgtaataacaagtgtcggtgtcgtatc--cgacaccaggacacgcctaatccgaggagtgtccgtgc 188512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 23794 - 23834
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgtgt 166  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  23794 tcacataattcagtgtaattacaagtgtcggtgtcgtgtgt 23834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 135347 - 135263
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||||||||  ||||||||| | ||||||||| |||||   ||||||||||||| |||||||| |||  |||| ||||||||||||    
T  135347 tcacataattctgtgtaattatatgtgtcggtgtcgtgtc--cgacaccaggacacgcctaatctgaggcgtgttcgtgcttcatag 135263  T

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Target: scaffold0168 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 21114 - 21152
Alignment:
Q  177 gacaagcctaatccgagaagtgtccgtgcttcataggtt 215  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  21114 gacacgcctaatccgagaagtatccgtgcttcataggtt 21152  T

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Target: scaffold0168; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 21372 - 21410
Alignment:
Q  177 gacaagcctaatccgagaagtgtccgtgcttcataggtt 215  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  21372 gacacgcctaatccgagaagtgtctgtgcttcataggtt 21410  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 53204 - 53242
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgt 164  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  53204 tcacataattcagtgtaattataagtgtcggtgccgtgt 53242  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 92898 - 92940
Alignment:
Q  169 gacaccaggacaagcctaatccgagaagtgtccgtgcttcata 211  Q
    |||||| ||||| |||||||||||| |||||||||||||||||    
T  92898 gacacctggacacgcctaatccgaggagtgtccgtgcttcata 92940  T

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Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 123652 - 123684
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  123652 tcacataattcagtgtaattacaagtgtcggtg 123684  T

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Target: scaffold0475 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 3391 - 3428
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatagg 213  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  3391 ggacacgcctaatccgaggagtgtccgtgcttcatagg 3428  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 3009 - 3058
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    |||||||||||| | ||| |||||||||||| |||||||||||| |||||    
T  3009 gtgttcgacaccggaacacgcctaatccgaggagtgtccgtgctccatag 3058  T

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Target: scaffold0021 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 130506 - 130539
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgc 159  Q
    |||||||||| |||||||||||||||||||||||    
T  130506 tcacataattcagtgtaattacaagtgtcggtgc 130539  T

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Target: scaffold0793 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 4857 - 4821
Alignment:
Q  176 ggacaagcctaatccgagaagtgtccgtgcttcatag 212  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  4857 ggacacgcctaatccgaggagtgtccgtgcttcatag 4821  T

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Target: scaffold0652 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 451 - 403
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcata 211  Q
    |||| ||||||| |||||  ||||||||||| |||||||||||||||||    
T  451 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

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Target: scaffold0236 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 25803 - 25763
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtgccgtgtgt 166  Q
    |||||||||| |||||||||| ||||||||||| |||||||    
T  25803 tcacataatttagtgtaattataagtgtcggtgtcgtgtgt 25763  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 71806 - 71858
Alignment:
Q  163 gtgttcgacaccaggacaagcctaatccgagaagtgtccgtgcttcataggtt 215  Q
    |||| ||||||| ||||| | |||||||||| |||||| ||||||||||||||    
T  71806 gtgtccgacaccgggacacgactaatccgaggagtgtcggtgcttcataggtt 71858  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 17784 - 17752
Alignment:
Q  126 tcacataattaagtgtaattacaagtgtcggtg 158  Q
    |||||||||| ||||||||||||||||||||||    
T  17784 tcacataatttagtgtaattacaagtgtcggtg 17752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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