View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_low_21 (Length: 400)
Name: NF11125_low_21
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 12 - 385
Target Start/End: Complemental strand, 5776964 - 5776591
Alignment:
| Q |
12 |
cagagactataataaacgaaacatataaaagaacataatcactattaagtattcacattttcatacctgcccttggtacaagctgttgaaaaagagacta |
111 |
Q |
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| T |
5776964 |
cagagactataataaacgaaacatataaaagaacttaatcactattaagtattcacattttcatacctgcccttggtacaagctgttgaaaaagagacta |
5776865 |
T |
|
| Q |
112 |
ggactgaagtgcttaaagaagagggatttgtcatcataagggacccttggaaccatatcattagagtaaacatatctaaaatacttcacatcatactttt |
211 |
Q |
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| T |
5776864 |
ggactgaagtgcttaaagaagagggatttgtcatcataagggacccttggaaccatatcattagagtaaacatatctaaaatacttcacatcatactttt |
5776765 |
T |
|
| Q |
212 |
tcaagttgcttttcatgaactccccaaacttctcgtctcctactcttggttgcccaaatgtataaacaccttgtaacttatccaacatgtcttcttcctc |
311 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5776764 |
tcaacttgcttttcatgaactccccaaacttctcgtctcctactcttggttgcccaaatgtataaacaccttgtaacttatccaacatgtcttcttcctc |
5776665 |
T |
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| Q |
312 |
atggaatataagcattgcgacaaacagaatagccaatgctccacccaaactatgccctgttaatatgaattttg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5776664 |
atggaatataagcattgcgacaaacagaatagccaatgctccacccaaactatgccctgttaatatgaattttg |
5776591 |
T |
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