View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_low_24 (Length: 359)
Name: NF11125_low_24
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 36 - 339
Target Start/End: Original strand, 9947289 - 9947592
Alignment:
| Q |
36 |
aaacttttaagacataaggtatatatgtcttctcaattatatattgttcaacatttcattccatgtaaaatttttaatatacgtttgacaaactaaaact |
135 |
Q |
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| T |
9947289 |
aaacttttaagacataaggtatataggtcttctcaattatatattgttcaacatttcattccatgtaagatttttaatatacgtttgacaaactaaaact |
9947388 |
T |
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| Q |
136 |
ctcaaacgaaacctcaaactatttcatatagccaaggaaaactacaactaaaaacatgtcaaccaactaacttaattataataaggaacatttaaatatt |
235 |
Q |
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| T |
9947389 |
ctcaaacgaaacctcaagctattttatatagccaaggaaaactacaactaaaaacatgtcaaccaactaacttaattataataaagaacatttaaatatt |
9947488 |
T |
|
| Q |
236 |
gagtatgcctgttttctattttgtcacatgcttgttaaataattattttagcatgcacttttattttcattttaaataattgtagcttccatgtgcacct |
335 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9947489 |
gagtttgcctgttttctattttgtcacatgcttgttaaataatcattttagcatgcacttttattttcactttaaataattgtagcttccatgtgcacct |
9947588 |
T |
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| Q |
336 |
cagt |
339 |
Q |
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|||| |
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| T |
9947589 |
cagt |
9947592 |
T |
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