View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11125_low_25 (Length: 356)

Name: NF11125_low_25
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11125_low_25
NF11125_low_25
[»] chr3 (13 HSPs)
chr3 (16-342)||(22479773-22480099)
chr3 (16-342)||(22456792-22457118)
chr3 (60-124)||(22356472-22356536)
chr3 (70-188)||(22435058-22435176)
chr3 (68-261)||(22466308-22466501)
chr3 (216-264)||(22356332-22356380)
chr3 (27-98)||(22619398-22619469)
chr3 (70-117)||(22628941-22628988)
chr3 (219-261)||(22366281-22366323)
chr3 (70-117)||(22441237-22441284)
chr3 (70-188)||(22352261-22352379)
chr3 (220-262)||(22441092-22441134)
chr3 (220-261)||(22633812-22633853)
[»] chr1 (1 HSPs)
chr1 (22-93)||(34991126-34991197)


Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 22480099 - 22479773
Alignment:
Q  16 aaaagtatgccaaacttgttgaccctctctcttagcaacaatgcttatgaagttgaaaggttacattttcaagatggatggtttgagaatttgaagcaac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22480099 aaaagtatgccaaacttgttgaccctctctcttagcaacaatgcttatgaagctgaaaggttacattttcaagatggatggtttgagaatttgaagcaac 22480000  T
Q  116 tatatcttgaagatttggaaaacttgaattacatcattatcgacgaaggagcgttgcgttctctaaaaaagctatcactaaccttcctccgccatctcaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22479999 tatatcttgaagatttggaaaacttgaattacatcattatcgacgaaggagcgttgcgttctctaaaaaagctatcactaaccttcctccgccatctcaa 22479900  T
Q  216 gactttaccaactggcattcaacacttgaaaaagcttgaagttctcagtattaagcaaatgagccatttatttagtcaagcannnnnnnncgatgaagga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  22479899 gactttaccaactggcattcaacacttgaaaaagcttgaagttctcagtattaagcaaatgagccatttatttagtcaagcattttttttcgatgaagga 22479800  T
Q  316 aaagtgcattggagcttcaagcatgtg 342  Q
    |||||||||||||||||||||||||||    
T  22479799 aaagtgcattggagcttcaagcatgtg 22479773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 22457118 - 22456792
Alignment:
Q  16 aaaagtatgccaaacttgttgaccctctctcttagcaacaatgcttatgaagttgaaaggttacattttcaagatggatggtttgagaatttgaagcaac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22457118 aaaagtatgccaaacttgttgaccctctctcttagcaacaatgcttatgaagctgaaaggttacattttcaagatggatggtttgagaatttgaagcaac 22457019  T
Q  116 tatatcttgaagatttggaaaacttgaattacatcattatcgacgaaggagcgttgcgttctctaaaaaagctatcactaaccttcctccgccatctcaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22457018 tatatcttgaagatttggaaaacttgaattacatcattatcgacgaaggagcgttgcgttctctaaaaaagctatcactaaccttcctccgccatctcaa 22456919  T
Q  216 gactttaccaactggcattcaacacttgaaaaagcttgaagttctcagtattaagcaaatgagccatttatttagtcaagcannnnnnnncgatgaagga 315  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  22456918 gactttaccaactggcattcaacacttgaaaaagcttggagttctcagtattaagcaaatgagccatttatttagtcaagcattttttttcgatgaagga 22456819  T
Q  316 aaagtgcattggagcttcaagcatgtg 342  Q
    |||||||||||||||||||||||||||    
T  22456818 aaagtgcattggagcttcaagcatgtg 22456792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 22356536 - 22356472
Alignment:
Q  60 ttatgaagttgaaaggttacattttcaagatggatggtttgagaatttgaagcaactatatcttg 124  Q
    ||||||||| ||||| |||||||| ||||||||||||||| |||| |||||| ||||||||||||    
T  22356536 ttatgaagtggaaagtttacatttccaagatggatggtttaagaacttgaaggaactatatcttg 22356472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 22435176 - 22435058
Alignment:
Q  70 gaaaggttacattttcaagatggatggtttgagaatttgaagcaactatatcttgaagatttggaaaacttgaattacatcattatcgacgaaggagcgt 169  Q
    ||||||||||||||| ||||||||||||||  |||||||||| |||||||||||   |||||    | ||||| | ||||| |||| |||||||| || |    
T  22435176 gaaaggttacattttgaagatggatggtttatgaatttgaaggaactatatcttcgtgatttctgtagcttgagtaacatccttattgacgaaggtgcat 22435077  T
Q  170 tgcgttctctaaaaaagct 188  Q
    || ||||||| ||||||||    
T  22435076 tgggttctctgaaaaagct 22435058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 22466501 - 22466308
Alignment:
Q  68 ttgaaaggttacattttcaagatggatggtttgagaatttgaagcaactatatcttgaagatttggaaaacttgaattacatcattatcgacgaaggagc 167  Q
    |||||||  |||||||||| ||||| |||||| ||||||||||| |||||||||||    ||||  |   ||||| | ||||| |||| |||||||| ||    
T  22466501 ttgaaagtatacattttcaggatgggtggtttaagaatttgaaggaactatatcttactaatttctattccttgagtcacatccttatagacgaaggtgc 22466402  T
Q  168 gttgcgttctctaaaaaagctatcactaaccttcctccgccatctcaagactttaccaactggcattcaacacttgaaaaagcttgaagttctc 261  Q
     ||| ||||||| ||||||||     || |||||  || ||| |||| ||| ||||||||||||||||| |||||| | || ||||||||||||    
T  22466401 attgggttctctgaaaaagctcaacttatccttcaacccccaactcatgacattaccaactggcattcatcacttgcacaaccttgaagttctc 22466308  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 22356380 - 22356332
Alignment:
Q  216 gactttaccaactggcattcaacacttgaaaaagcttgaagttctcagt 264  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||    
T  22356380 gactttaccaactggcattcaacacttacacaagcttgaagttctcagt 22356332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 22619469 - 22619398
Alignment:
Q  27 aaacttgttgaccctctctcttagcaacaatgcttatgaagttgaaaggttacattttcaagatggatggtt 98  Q
    |||||||||| |||||||  | | ||||||||||||||||| |||||| ||||||||||| |||||| ||||    
T  22619469 aaacttgttgtccctctcaatcatcaacaatgcttatgaaggtgaaagtttacattttcacgatggagggtt 22619398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 22628988 - 22628941
Alignment:
Q  70 gaaaggttacattttcaagatggatggtttgagaatttgaagcaacta 117  Q
    ||||||||||||||||||||||||||||||  |||||||||| |||||    
T  22628988 gaaaggttacattttcaagatggatggtttatgaatttgaaggaacta 22628941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 261
Target Start/End: Complemental strand, 22366323 - 22366281
Alignment:
Q  219 tttaccaactggcattcaacacttgaaaaagcttgaagttctc 261  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  22366323 tttaccaactggcattcaacacttacaaaagcttgaagttctc 22366281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 22441284 - 22441237
Alignment:
Q  70 gaaaggttacattttcaagatggatggtttgagaatttgaagcaacta 117  Q
    ||||||||||||||||||| ||||||||||  |||||||||| |||||    
T  22441284 gaaaggttacattttcaagttggatggtttacgaatttgaaggaacta 22441237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 22352379 - 22352261
Alignment:
Q  70 gaaaggttacattttcaagatggatggtttgagaatttgaagcaactatatcttgaagatttggaaaacttgaattacatcattatcgacgaaggagcgt 169  Q
    ||||| |||||||||||||| || | ||||  |||||||||| ||||||||||||  |||||  |  | |||| | ||||| |||| |||||||| || |    
T  22352379 gaaagtttacattttcaagaagggttgtttatgaatttgaagaaactatatcttgctgatttccatgaattgagtcacatccttattgacgaaggtgcat 22352280  T
Q  170 tgcgttctctaaaaaagct 188  Q
    || ||||||| ||||||||    
T  22352279 tgggttctctgaaaaagct 22352261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 22441134 - 22441092
Alignment:
Q  220 ttaccaactggcattcaacacttgaaaaagcttgaagttctca 262  Q
    ||||||| |||||||||||||||  ||||||||||||||||||    
T  22441134 ttaccaagtggcattcaacacttacaaaagcttgaagttctca 22441092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 22633853 - 22633812
Alignment:
Q  220 ttaccaactggcattcaacacttgaaaaagcttgaagttctc 261  Q
    |||||||||||||||||||||||  | |||||||||||||||    
T  22633853 ttaccaactggcattcaacacttacacaagcttgaagttctc 22633812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 34991126 - 34991197
Alignment:
Q  22 atgccaaacttgttgaccctctctcttagcaacaatgcttatgaagttgaaaggttacattttcaagatgga 93  Q
    ||||||||||||||| |||||||  | | |||||| |||||||||| |||||| ||||||||||| ||||||    
T  34991126 atgccaaacttgttgtccctctcaatcatcaacaaagcttatgaaggtgaaagtttacattttcatgatgga 34991197  T

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