View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11125_low_27 (Length: 323)

Name: NF11125_low_27
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11125_low_27
NF11125_low_27
[»] chr7 (8 HSPs)
chr7 (11-305)||(6091302-6091582)
chr7 (37-72)||(31377001-31377036)
chr7 (39-77)||(41099759-41099797)
chr7 (43-80)||(2144554-2144591)
chr7 (43-80)||(5937436-5937473)
chr7 (43-80)||(9037732-9037769)
chr7 (43-80)||(35238199-35238236)
chr7 (48-80)||(18678160-18678192)
[»] chr8 (2 HSPs)
chr8 (43-80)||(27733854-27733891)
chr8 (36-80)||(22600529-22600573)
[»] chr6 (7 HSPs)
chr6 (48-80)||(33135595-33135627)
chr6 (43-81)||(5635902-5635940)
chr6 (43-80)||(6751897-6751934)
chr6 (43-80)||(10031577-10031614)
chr6 (43-80)||(19369824-19369861)
chr6 (40-80)||(14514792-14514832)
chr6 (46-78)||(32297993-32298025)
[»] chr1 (2 HSPs)
chr1 (37-80)||(40686773-40686816)
chr1 (36-80)||(3921667-3921711)
[»] scaffold0314 (1 HSPs)
scaffold0314 (35-72)||(8947-8984)
[»] chr5 (3 HSPs)
chr5 (43-76)||(18106651-18106684)
chr5 (43-80)||(21319960-21319997)
chr5 (43-80)||(30080516-30080553)
[»] chr4 (1 HSPs)
chr4 (43-80)||(13307884-13307921)
[»] chr3 (1 HSPs)
chr3 (43-80)||(15864252-15864289)
[»] chr2 (2 HSPs)
chr2 (43-80)||(18512157-18512194)
chr2 (43-80)||(43586020-43586057)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 6091302 - 6091582
Alignment:
Q  11 cagagacgagggacaaaacacacataacatcaataaaattttgagaaaatgatataattcaatataatcaatatgtatgtgctggaaacttacacaggtc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6091302 cagagacgagggacaaaacacacataacatcaataaaattttgagaaaatgatataattcaatataatcaatatgtatgtgctggaaacttacacaggtc 6091401  T
Q  111 caactttgagacacaccttctaccaaaagcattggtgttaggaagatcaatgatcaactcacatctacatcaaaaagagggaaaaagaattgaaacctcc 210  Q
    |||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6091402 caacttcgagacacaccttctaccaaaaacgttggtgttaggaagatcaatgatcaactcacatctacatcaaaaagaggggaaaagaattgaaacctcc 6091501  T
Q  211 ccaagtaaaattcactttgcgataaattcaagataaatatgagctccacgtaaattaggcaaatgatagttaaatgaattattttatttagtttt 305  Q
    |||||||||||| ||| ||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6091502 ccaagtaaaatttactatgcgataaat--------------agctccacgtaaattaggcaaatgatagttaaatgaattattttatttagtttt 6091582  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 31377001 - 31377036
Alignment:
Q  37 acatcaataaaattttgagaaaatgatataattcaa 72  Q
    |||||||||||||||||||||||||| |||||||||    
T  31377001 acatcaataaaattttgagaaaatgacataattcaa 31377036  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 41099797 - 41099759
Alignment:
Q  39 atcaataaaattttgagaaaatgatataattcaatataa 77  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  41099797 atcaataataatttgagaaaatgatataattcaatataa 41099759  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 2144591 - 2144554
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatataatca 80  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  2144591 ataaaattttgagaaaatgacataattcaatgtaatca 2144554  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 5937473 - 5937436
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatataatca 80  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  5937473 ataaaattttgagaaaatgacataattcaatgtaatca 5937436  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 9037769 - 9037732
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatataatca 80  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  9037769 ataaaattttgaaaaaatgatatagttcaatataatca 9037732  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 35238236 - 35238199
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatataatca 80  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  35238236 ataatattttgagaaaatgacataattcaatataatca 35238199  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 18678160 - 18678192
Alignment:
Q  48 attttgagaaaatgatataattcaatataatca 80  Q
    ||||||||||||||| |||||||||||||||||    
T  18678160 attttgagaaaatgacataattcaatataatca 18678192  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 27733854 - 27733891
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatataatca 80  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  27733854 ataaaattttgagaaaatgatataattcaatgtaatca 27733891  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 22600529 - 22600573
Alignment:
Q  36 aacatcaataaaattttgagaaaatgatataattcaatataatca 80  Q
    |||| |||||||||||  ||||||||| |||||||||||||||||    
T  22600529 aacaccaataaaatttaaagaaaatgacataattcaatataatca 22600573  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 33135595 - 33135627
Alignment:
Q  48 attttgagaaaatgatataattcaatataatca 80  Q
    |||||||||||||||||||||||||||||||||    
T  33135595 attttgagaaaatgatataattcaatataatca 33135627  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 5635940 - 5635902
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatataatcaa 81  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  5635940 ataaaattttaagaaaatgacataattcaatataatcaa 5635902  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 6751934 - 6751897
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatataatca 80  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  6751934 ataaaattttgagaaaatgacataattcaatgtaatca 6751897  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 10031577 - 10031614
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatataatca 80  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  10031577 ataaaattttgagaaaatgacataattcaatgtaatca 10031614  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 19369824 - 19369861
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatataatca 80  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  19369824 ataaaattttgagaaaatgacataattcaatgtaatca 19369861  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 14514792 - 14514832
Alignment:
Q  40 tcaataaaattttgagaaaatgatataattcaatataatca 80  Q
    ||||||||||||| | |||||||||||||||||| ||||||    
T  14514792 tcaataaaattttaaaaaaatgatataattcaatgtaatca 14514832  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 32297993 - 32298025
Alignment:
Q  46 aaattttgagaaaatgatataattcaatataat 78  Q
    |||||||||||||||||||||||||| ||||||    
T  32297993 aaattttgagaaaatgatataattcattataat 32298025  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 40686816 - 40686773
Alignment:
Q  37 acatcaataaaattttgagaaaatgatataattcaatataatca 80  Q
    ||||| |||||||||||| |||||||||||||||||| ||||||    
T  40686816 acatcgataaaattttgataaaatgatataattcaatgtaatca 40686773  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 3921667 - 3921711
Alignment:
Q  36 aacatcaataaaattttgagaaaatgatataattcaatataatca 80  Q
    ||||||||||| | ||||||||||||| |||||||||| ||||||    
T  3921667 aacatcaataataatttgagaaaatgacataattcaatgtaatca 3921711  T

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Target: scaffold0314 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 8947 - 8984
Alignment:
Q  35 taacatcaataaaattttgagaaaatgatataattcaa 72  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  8947 taacatcgataaaattttgagaaaatgacataattcaa 8984  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 18106684 - 18106651
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatata 76  Q
    |||||||||||| |||||||||||||||||||||    
T  18106684 ataaaattttgaaaaaatgatataattcaatata 18106651  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 21319997 - 21319960
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatataatca 80  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  21319997 ataaaattttgaaaaaatgatataattcaatgtaatca 21319960  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 30080553 - 30080516
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatataatca 80  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  30080553 ataaaattttgagaaaatgacataattcaatgtaatca 30080516  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 13307884 - 13307921
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatataatca 80  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  13307884 ataaaattttgagaaaatgacataattcaatgtaatca 13307921  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 15864252 - 15864289
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatataatca 80  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  15864252 ataaagttttgagaaaatgacataattcaatataatca 15864289  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 18512194 - 18512157
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatataatca 80  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  18512194 ataaaattttgagaaaataatataattcaatgtaatca 18512157  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 43586057 - 43586020
Alignment:
Q  43 ataaaattttgagaaaatgatataattcaatataatca 80  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  43586057 ataaaattttgagaaaatgacataattcaatgtaatca 43586020  T

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