View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11125_low_29 (Length: 316)

Name: NF11125_low_29
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11125_low_29
NF11125_low_29
[»] chr4 (4 HSPs)
chr4 (12-303)||(35105442-35105733)
chr4 (12-214)||(34412277-34412479)
chr4 (29-135)||(22422989-22423095)
chr4 (29-87)||(40547116-40547174)
[»] chr1 (3 HSPs)
chr1 (29-214)||(38674963-38675147)
chr1 (29-135)||(10615992-10616097)
chr1 (12-74)||(11240403-11240465)
[»] scaffold0072 (1 HSPs)
scaffold0072 (29-135)||(46788-46894)
[»] chr3 (5 HSPs)
chr3 (29-135)||(52796519-52796625)
chr3 (48-122)||(43885535-43885608)
chr3 (48-122)||(28254600-28254673)
chr3 (12-131)||(24696215-24696334)
chr3 (48-122)||(24345594-24345667)
[»] chr7 (5 HSPs)
chr7 (12-192)||(22644439-22644625)
chr7 (119-192)||(33614764-33614837)
chr7 (29-88)||(45657464-45657523)
chr7 (29-87)||(18534801-18534859)
chr7 (30-74)||(27542191-27542235)
[»] chr6 (2 HSPs)
chr6 (29-135)||(5045689-5045795)
chr6 (36-135)||(252036-252135)
[»] chr2 (1 HSPs)
chr2 (36-135)||(27869204-27869303)
[»] chr8 (4 HSPs)
chr8 (29-135)||(2116270-2116375)
chr8 (29-87)||(3955822-3955880)
chr8 (29-87)||(19439581-19439639)
chr8 (29-87)||(19575730-19575788)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 303
Target Start/End: Original strand, 35105442 - 35105733
Alignment:
Q  12 agagaagagatagtgagtttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttctctacaaaa 111  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| ||||||    
T  35105442 agagaagagatagtgagtttctcctgtttgtaatgcagagaaagagggaagagagactaaaaatatgtggggcccacaactttttgttttctccacaaaa 35105541  T
Q  112 tagagaagaaacgagagagagaagtgtcttaattctgttgttccatttttacccctacattcaaattgcatttatgatttactatctttcctgcaaattg 211  Q
     |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35105542 cagagaagaaacgggagagagaagtgtcttaattctgttgttccgtttttacccctacattcaaattgcatttatgatttactatctttcgtgcaaattg 35105641  T
Q  212 caaatatgaaggatgaaacaaagcaacgttgttggagatcaacaaaaggtatcatttgccggtgaattagagatagtgttttggtttgatgt 303  Q
    |||||||||||||||||||||||||||| || ||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||||||    
T  35105642 caaatatgaaggatgaaacaaagcaacgctggtggagatcagctgaaggtatcatttgccggtgaatcagagatagtgttttggtttgatgt 35105733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 34412277 - 34412479
Alignment:
Q  12 agagaagagatagtgagtttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttctctacaaaa 111  Q
    |||||||||||||| | ||||||||||||| |||| |||||||||| ||||||||||||||||  |||||||||||  ||||||||||||||| ||||||    
T  34412277 agagaagagatagtaactttctcctgtttgaaatgcagagaaagagagaagagagactaaaaaactgtgggacccactgctttttgttttctccacaaaa 34412376  T
Q  112 tagagaagaaacgagagagagaagtgtcttaattctgttgttccatttttacccctacattcaaattgcatttatgatttactatctttcctgcaaattg 211  Q
     |||||||||| | |||||||||| ||| || || |||| |||||||||||||| |  |||  |||| ||||||||| ||| ||||||||||||||||||    
T  34412377 cagagaagaaatgggagagagaagggtcatatttttgttattccatttttacccttgtatttgaatttcatttatgacttattatctttcctgcaaattg 34412476  T
Q  212 caa 214  Q
    |||    
T  34412477 caa 34412479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 22423095 - 22422989
Alignment:
Q  29 tttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttctctacaaaatagagaagaaacgagag 128  Q
    |||||| ||||||||||| ||||||| |||||||||||| ||||||   |||||| ||||  ||||||| ||||||  || ||||||||||||| | |||    
T  22423095 tttctcttgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggaaccatcactttttggtttctcctcacaatagagaagaaaggggag 22422996  T
Q  129 agagaag 135  Q
    |||||||    
T  22422995 agagaag 22422989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 40547116 - 40547174
Alignment:
Q  29 tttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggaccca 87  Q
    |||||| ||||||||||| ||||||| |||||||||||| ||||||   ||||||||||    
T  40547116 tttctcttgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggaccca 40547174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 214
Target Start/End: Complemental strand, 38675147 - 38674963
Alignment:
Q  29 tttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttct-ctacaaaatagagaagaaacgaga 127  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||| |||||||||||  |||||||||||||| |  |  || || ||||| ||| ||    
T  38675147 tttctcctatttggaatgcagagaaagagagaagagagactaaaaatttgtgggacccactgctttttgttttctccgcctgaacagcgaagagacggga 38675048  T
Q  128 gagagaagtgtcttaattctgttgttccatttttacccctacattcaaattgcatttatgatttactatctttcctgcaaattgcaa 214  Q
    |||||   || ||||||| |||||||||||||||| ||||  ||| |||||  |||||||||||| ||||||| |||||||||||||    
T  38675047 gagagggatggcttaattttgttgttccattttta-ccctttattgaaattttatttatgatttattatcttt-ctgcaaattgcaa 38674963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 10615992 - 10616097
Alignment:
Q  29 tttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttctctacaaaatagagaagaaacgagag 128  Q
    |||||| |||||| |||| ||||||| |||||||||||| ||||||   |||||||||||  ||||||| ||||||  | | |||||||||||| | |||    
T  10615992 tttctcttgtttgaaatgaagagaaatagggaagagagattaaaaagtagtgggacccatcactttttggtttctcctc-acatagagaagaaatgggag 10616090  T
Q  129 agagaag 135  Q
    |||||||    
T  10616091 agagaag 10616097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 11240403 - 11240465
Alignment:
Q  12 agagaagagatagtgagtttctcctgtttggaatgtagagaaagagggaagagagactaaaaa 74  Q
    |||||||||||||| | |||||| ||||| ||||| ||||||| | |||||||||| ||||||    
T  11240403 agagaagagatagtaactttctcttgtttagaatgaagagaaataaggaagagagattaaaaa 11240465  T

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Target: scaffold0072 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 46894 - 46788
Alignment:
Q  29 tttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttctctacaaaatagagaagaaacgagag 128  Q
    |||||| ||||||||||| ||||||| |||||||||||| ||||||   |||||||||||  ||||||| ||||||  || ||||||||||||| | |||    
T  46894 tttctcttgtttggaatggagagaaatagggaagagagattaaaaagtagtgggacccatcactttttggtttctcctcacaatagagaagaaaggggag 46795  T
Q  129 agagaag 135  Q
    |||||||    
T  46794 agagaag 46788  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 52796519 - 52796625
Alignment:
Q  29 tttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttctctacaaaatagagaagaaacgagag 128  Q
    ||||||| |||||||||| ||||||| |||||||||||| ||||||   |||||||||||  ||||||| ||||||  || ||||||||||||| | |||    
T  52796519 tttctccagtttggaatgaagagaaatagggaagagagattaaaaagtagtgggacccatcactttttggtttctcctcacaatagagaagaaatgggag 52796618  T
Q  129 agagaag 135  Q
    |||||||    
T  52796619 agagaag 52796625  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 43885608 - 43885535
Alignment:
Q  48 agagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttctctacaaaatagagaagaaa 122  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||| ||| |  ||||| ||||||||||||||||    
T  43885608 agagaaagagggaagagaga-taaaaacatgtgggacccatggctgtttttagtctctccaaaatagagaagaaa 43885535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 28254600 - 28254673
Alignment:
Q  48 agagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttctctacaaaatagagaagaaa 122  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||| ||  |  ||||| ||||||||||||||||    
T  28254600 agagaaagagggaagagaga-taaaaacatgtgggacccatggctgttattagtctcttcaaaatagagaagaaa 28254673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 24696334 - 24696215
Alignment:
Q  12 agagaagagatagtgagtttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttctctacaaaa 111  Q
    ||||||||||| |||| |||||| ||||||||| | ||| ||| | |||||||||| | ||||  |||||||||||   ||||||| |||||| ||| ||    
T  24696334 agagaagagatggtgactttctcttgtttggaaaggagaaaaatatggaagagagattgaaaaattgtgggacccaccactttttggtttctccacataa 24696235  T
Q  112 tagagaagaaacgagagaga 131  Q
     || ||||||| | ||||||    
T  24696234 cagcgaagaaaggggagaga 24696215  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 24345594 - 24345667
Alignment:
Q  48 agagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttctctacaaaatagagaagaaa 122  Q
    |||||||||||||||||||| | |||| ||||||||||||| ||| ||| |  ||||| | ||||||||||||||    
T  24345594 agagaaagagggaagagaga-tcaaaacatgtgggacccatggctgtttttagtctctccgaaatagagaagaaa 24345667  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 22644625 - 22644439
Alignment:
Q  12 agagaagagatagtgagtttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttctctacaaaa 111  Q
    ||||||||||| || | |||||| | ||||||||| | | |||||  ||||||||||||||||| |||| ||||||  |||||||||||||||  |   |    
T  22644625 agagaagagatggtaaatttctcttatttggaatgcaaaaaaagatagaagagagactaaaaatttgtgagacccagtgctttttgttttctcctcttca 22644526  T
Q  112 tagagaagaaac------gagagagagaagtgtcttaattctgttgttccatttttacccctacattcaaattgcatttatgattta 192  Q
     |  ||||||||      |||||||||| ||| ||||||| || |||||||||||||||| |  ||||| ||| |||||||||||||    
T  22644525 catcgaagaaacaggagagagagagagaggtgccttaattttggtgttccatttttacccttgtattcatatttcatttatgattta 22644439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 33614837 - 33614764
Alignment:
Q  119 gaaacgagagagagaagtgtcttaattctgttgttccatttttacccctacattcaaattgcatttatgattta 192  Q
    |||||| |||||||| || |||||||| || |||||||||||||||| |  ||||| ||| |||||||||||||    
T  33614837 gaaacgggagagagaggtatcttaattttggtgttccatttttacccatgtattcatatttcatttatgattta 33614764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 45657464 - 45657523
Alignment:
Q  29 tttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggacccat 88  Q
    |||||| ||||||||||| ||||||| |||||||||||| ||||||   |||||||||||    
T  45657464 tttctcttgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggacccat 45657523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 18534859 - 18534801
Alignment:
Q  29 tttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggaccca 87  Q
    |||||| ||||||||||| ||||||| |||||||||||| ||||||   ||||||||||    
T  18534859 tttctcttgtttggaatgaagagaaatagggaagagagattaaaaaatagtgggaccca 18534801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 27542191 - 27542235
Alignment:
Q  30 ttctcctgtttggaatgtagagaaagagggaagagagactaaaaa 74  Q
    ||||| ||||||||||| ||||||| |||||||||||| ||||||    
T  27542191 ttctcttgtttggaatgaagagaaatagggaagagagattaaaaa 27542235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 5045795 - 5045689
Alignment:
Q  29 tttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttctctacaaaatagagaagaaacgagag 128  Q
    |||||| ||||||||||| ||||||| |||||||||||| ||||||   |||||||||||  ||||||| |||||   || ||| ||||||||| | |||    
T  5045795 tttctcttgtttggaatggagagaaatagggaagagagattaaaaagtagtgggacccatcactttttggtttcttctcacaatcgagaagaaaggggag 5045696  T
Q  129 agagaag 135  Q
    |||||||    
T  5045695 agagaag 5045689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 252135 - 252036
Alignment:
Q  36 tgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttctctacaaaatagagaagaaacgagagagagaag 135  Q
    ||||||||||| ||||||| |||||||||||| ||||||    ||||||||||  ||||||| || |||  || ||||||||||||| | ||||||||||    
T  252135 tgtttggaatgaagagaaatagggaagagagattaaaaagtaatgggacccatcactttttggttgctcctcacaatagagaagaaaggggagagagaag 252036  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 27869303 - 27869204
Alignment:
Q  36 tgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttctctacaaaatagagaagaaacgagagagagaag 135  Q
    |||||| |||| ||||||| |||||||||||| ||||||   |||||||||||  ||||||  ||||||  || ||||||||||||| | ||||||||||    
T  27869303 tgtttgaaatgaagagaaatagggaagagagattaaaaagtagtgggacccattacttttttatttctcctcacaatagagaagaaaggggagagagaag 27869204  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 2116270 - 2116375
Alignment:
Q  29 tttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggacccatagctttttgttttctctacaaaatagagaagaaacgagag 128  Q
    |||||| ||||||||||| ||||||| |||||||||||| ||||||   |||||| ||||   |||||| ||||||  |  ||||||||||||| |||||    
T  2116270 tttctcttgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggatccat-catttttggtttctcctcgcaatagagaagaaatgagag 2116368  T
Q  129 agagaag 135  Q
    |||||||    
T  2116369 agagaag 2116375  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 3955880 - 3955822
Alignment:
Q  29 tttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggaccca 87  Q
    |||||| ||||||||||| ||||||| |||||||||||| ||||||   ||||||||||    
T  3955880 tttctcttgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggaccca 3955822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 19439639 - 19439581
Alignment:
Q  29 tttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggaccca 87  Q
    |||||| ||||||||||| ||||||| |||||||||||| ||||||   ||||||||||    
T  19439639 tttctcttgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggaccca 19439581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 19575788 - 19575730
Alignment:
Q  29 tttctcctgtttggaatgtagagaaagagggaagagagactaaaaatatgtgggaccca 87  Q
    |||||| ||||||||||| ||||||| |||||||||||| ||||||   ||||||||||    
T  19575788 tttctcttgtttggaatgaagagaaatagggaagagagattaaaaagtagtgggaccca 19575730  T

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