View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11125_low_3 (Length: 766)
Name: NF11125_low_3
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_low_3 |
 | |
|
| [»] scaffold0855 (1 HSPs) |
| | |
|
| [»] scaffold0847 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 216 - 729
Target Start/End: Complemental strand, 23056548 - 23056037
Alignment:
| Q |
216 |
ttctctccgctgccacactgcctcctcttgctgttctccaaagccctatctgtctgtatccttgattctctcctccgctgaatcatttcttgtgcttctt |
315 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23056548 |
ttctctccgccgccgcactgcctcctcttgttgttctccaaagccctatctgtatgtatccttgattctctcctccgctgaatcatttcttgtgcttctt |
23056449 |
T |
|
| Q |
316 |
ccctcttgtacttataggtacgtgtgacctaatttctaatgtttcctttggttcatacaataaagcctagtaacctgcaataagtgaatcattttcattc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23056448 |
ccctcttgtacttataggtacgtgtgacctaatttctaatgtttcctttggtttatacaataaagcctagtaacc--caataagtgaatcattttcattc |
23056351 |
T |
|
| Q |
416 |
acaatccatcaattcattaactgacttgcacgacgcgtagctcttaaaacacgatgtgtcttaggcagtgatgagacactttcaattcttcgtagccacg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23056350 |
acaatccatcaattcattaactgacttgcacgacgcgtagctcttaaaacacgatgtgtcttaggcagtgatgagacactttcaattcttcgtagccacg |
23056251 |
T |
|
| Q |
516 |
caacgcacaactcatagcatgcatcgaatttgaggcattggcaagatacttctacatttccttcaacaacgcaacgggtggctcgtaacccacatcacac |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23056250 |
caacgcacaactcatagcatgcatcgaatttgaggcattggcaagatacttctacatttccttcaacaatgcaacgggtggctcgtaacccacatcacac |
23056151 |
T |
|
| Q |
616 |
atgtaccaatagttgatccttcatctttgcttcattccttgtcacatttaccctcatggaagtatccatagtgactatgtctcaagaaattaattgatat |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23056150 |
atgtaccaatagttgatccttcatctttgcttcattccttgtcacatttatcctcacggaaacatccatagtgactatgtctcaagaaattaattgatat |
23056051 |
T |
|
| Q |
716 |
atcttgtaagaaag |
729 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
23056050 |
atcttgtaagaaag |
23056037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 1594910 - 1594855
Alignment:
| Q |
122 |
tacttaacctattcaaatagaaattatctagacatagaaagaagaataaataacat |
177 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
1594910 |
tacttaacctaatcaaagagaaattagctagacagtgaaagaagaataaataacat |
1594855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0855 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0855
Description:
Target: scaffold0855; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 1203 - 1329
Alignment:
| Q |
71 |
aaaggtactcagcaaattacaaggttcaagcaatttacataaaatatcctctacttaacctattcaaatagaaattatctagacatagaaagaagaataa |
170 |
Q |
| |
|
||||||||||| ||||||| | |||||||| | |||| | || ||||| || |||||||| ||||| ||||||| || |||||| | |||| ||||| |
|
|
| T |
1203 |
aaaggtactcaacaaattatatggttcaagaagtttatagtgaagatcctttaattaacctaatcaaagagaaatttgctggacataaagagaaaaataa |
1302 |
T |
|
| Q |
171 |
ataacatggagataaaaataaccatga |
197 |
Q |
| |
|
|||||||||| || ||||||||||||| |
|
|
| T |
1303 |
ataacatggaaattaaaataaccatga |
1329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0847 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0847
Description:
Target: scaffold0847; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 1368 - 1494
Alignment:
| Q |
71 |
aaaggtactcagcaaattacaaggttcaagcaatttacataaaatatcctctacttaacctattcaaatagaaattatctagacatagaaagaagaataa |
170 |
Q |
| |
|
||||||||||| ||||||| | |||||||| | |||| | || ||||| || |||||||| ||||| ||||||| || |||||| | |||| ||||| |
|
|
| T |
1368 |
aaaggtactcaacaaattatatggttcaagaagtttatagtgaagatcctttaattaacctaatcaaagagaaatttgctggacataaagagaaaaataa |
1467 |
T |
|
| Q |
171 |
ataacatggagataaaaataaccatga |
197 |
Q |
| |
|
|||||||||| || ||||||||||||| |
|
|
| T |
1468 |
ataacatggaaattaaaataaccatga |
1494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 9618952 - 9619029
Alignment:
| Q |
116 |
atcctctacttaacctattcaaatagaaattatctagacatagaaagaagaataaataacatggagataaaaataacca |
194 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| ||||| ||||| |||| ||||||||||||||| | |||||||||| |
|
|
| T |
9618952 |
atcctctacgtaacctaatcaaatagaaattaactagaaatagagagaa-aataaataacatggaaagtaaaataacca |
9619029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 4962386 - 4962476
Alignment:
| Q |
105 |
ttacataaaatatcctctacttaacctattcaaatagaaattatctagacatagaaagaagaataaataacatggagataaaaataaccat |
195 |
Q |
| |
|
||||||| || ||| ||||||||||||| |||| |||| ||| ||||||| || |||||||||||||||||| | | ||||||||||| |
|
|
| T |
4962386 |
ttacatagaagatcatctacttaacctaatcaaggagaatttagttagacatggagagaagaataaataacatgaaaagtaaaataaccat |
4962476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University