View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11125_low_30 (Length: 295)
Name: NF11125_low_30
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 31727748 - 31727460
Alignment:
| Q |
1 |
tgctgaaaactcctaataaaaatatttagaagatagagcagggcaacaaaatatgttaaaacccaaatcatatggaggagaaatgaagtcaactgttgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31727748 |
tgctgaaaactcctaataaaaatatttagaagatagagcagggcaacaaaatatgttaaaacccaaatcatatggaggagaaatgaagtcaactgttgca |
31727649 |
T |
|
| Q |
101 |
gaaacatcacaagattggacaaatcatagacttgaatattacggtagggtcacaatacattcacaatacactacagtataatagacttggatattatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31727648 |
gaaacatcacaagattggacaaatcatagacttgaatattacggtagggtcacaatacattcacaatagactacagtataatagacttggatattatgtt |
31727549 |
T |
|
| Q |
201 |
tagattcactctacaccacaaaattaagataatcattggatgtttagagtttaaacagctgataattctttgttgaatcttcttctctc |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31727548 |
tagattcactctacaccacaaaattaagataatcattggatgtttagagtttaaacagctgataattctttgttgaatcttcttctctc |
31727460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 31720457 - 31720380
Alignment:
| Q |
181 |
atagacttggatattatgtttagattcactctacaccacaaaattaagataatcattggatgtttagagtttaaacagc |
259 |
Q |
| |
|
|||||||||||| ||||| | || |||| ||||||||||||||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
31720457 |
atagacttggattttatgat-aggttcatactacaccacaaaattaaaaatatcattggaaatttagagtttaaacagc |
31720380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 31714617 - 31714541
Alignment:
| Q |
182 |
tagacttggatattatgtttagattcactctacaccacaaaattaagataatcattggatgtttagagtttaaacagc |
259 |
Q |
| |
|
||||||||||||||||| | || |||| ||||||||||||||||| | |||| |||| ||||||||||||||||| |
|
|
| T |
31714617 |
tagacttggatattatgat-aggttcatactacaccacaaaattaaaaatatcaatggaaatttagagtttaaacagc |
31714541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University