View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_low_31 (Length: 276)
Name: NF11125_low_31
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 3961531 - 3961281
Alignment:
| Q |
19 |
gatctcttgtaaggaaaaatattttgaattaagccttcatc------aaatttgttgactagtcatgatagataatgaacagtgtgtacaaacaagtacc |
112 |
Q |
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| T |
3961531 |
gatctctagtaaggacaaatattttaaattaagccttcatcttggctaaatttgttgactagtcatgatagataatgaacagtgtttacaaacaagtacc |
3961432 |
T |
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| Q |
113 |
ttaaaaagctatttctcaacttgatctttaaccattcattcttcttttatttgtaagtaaattactgaccatgaattaatattatacctaattgatgctc |
212 |
Q |
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| T |
3961431 |
ttagaaagctatttctcaacttgatctttaaccattcattcttcttttatttgcaagtaaattactgaccatgaattaatattatacctaattgatgctc |
3961332 |
T |
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| Q |
213 |
tggatatgttaggaatgagattatactcttgctcctatatgttgaaacttc |
263 |
Q |
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| T |
3961331 |
tggatatgttaggaatgagattatactcttgttcctatatgttgaaacttc |
3961281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 264
Target Start/End: Original strand, 3806474 - 3806508
Alignment:
| Q |
230 |
agattatactcttgctcctatatgttgaaacttca |
264 |
Q |
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| T |
3806474 |
agattatactctttctcctatatgttgaaacttca |
3806508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 264
Target Start/End: Original strand, 3813117 - 3813151
Alignment:
| Q |
230 |
agattatactcttgctcctatatgttgaaacttca |
264 |
Q |
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| T |
3813117 |
agattatactctttctcctatatgttgaaacttca |
3813151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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