View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_low_35 (Length: 248)
Name: NF11125_low_35
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_low_35 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (5 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 4915169 - 4915406
Alignment:
| Q |
11 |
atgaaaattacatcgagctaggaaaggcgtacctaaatgcatcttcttatgcaggccaatatacagattatgggaagcttattggtttcctcaaaaccca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4915169 |
atgaaaattacatcgagctaggaaaggcgtacctaaatgcatcttcttatgcaggccaatatacagattatgggaagcttattggtttcctcaaaaccca |
4915268 |
T |
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| Q |
111 |
tgttggagcttccgacataccttatatatctcctccaaatgctgggttttcagccgcagatacaccacttaccaaagaaaatgcccttttgcttttggat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4915269 |
tgttggagcttccgacataccttatatatctcctccaaatgctgggttttcagccgcagatacaccacttaccaaagaaaatgcccttttgcttttggat |
4915368 |
T |
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| Q |
211 |
tggattcagaaactgaagtataggggagtgaacctacc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4915369 |
tggattcagaaactgaagtataggggagtgaacctacc |
4915406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 28 - 248
Target Start/End: Original strand, 1505432 - 1505652
Alignment:
| Q |
28 |
ctaggaaaggcgtacctaaatgcatcttcttatgcaggccaatatacagattatgggaagcttattggtttcctcaaaacccatgttggagcttccgaca |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| || || | | ||| |||||||| |||||||||| |||||||| |||||||||| |
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| T |
1505432 |
ctaggaaaggcgtacctaaatgcatcttcttatgcaggtcaaaattcaagctctaggatgcttattgatttcctcaaagcccatgttagagcttccgatg |
1505531 |
T |
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| Q |
128 |
taccttatatatctcctccaaatgctgggttttcagccgcagatacaccacttaccaaagaaaatgcccttttgcttttggattggattcagaaactgaa |
227 |
Q |
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| T |
1505532 |
taccttacatatctcctccaaatgctgggttttcagccgcagatacaccacttaccaaagacaatgcctttttgcttttggattggattcggaatctgaa |
1505631 |
T |
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| Q |
228 |
gtataggggagtgaacctacc |
248 |
Q |
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| T |
1505632 |
gtataggggagtgcacctacc |
1505652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 248
Target Start/End: Complemental strand, 2931644 - 2931424
Alignment:
| Q |
25 |
gagctaggaaaggcgtacctaaatgcatcttcttatgcaggccaatatacagattatgggaagcttattggtttcctcaaaacccatgttggagcttccg |
124 |
Q |
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|||||||||||| ||||||||||||||||| |||||| ||||| |||||||| |||||||||||||| |||||||||| |||||||||||||| | |
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| T |
2931644 |
gagctaggaaagatgtacctaaatgcatctt---atgcagaccaatctacagattctgggaagcttattgaattcctcaaaaatcatgttggagcttctg |
2931548 |
T |
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| Q |
125 |
acataccttatatatctcctccaaatgctgggttttcagccgcagatacaccacttaccaaagaaaatgcccttttgcttttggattggattcagaaact |
224 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||| |||| |||||||||||||||| | |||| |
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| T |
2931547 |
acataccttatctatctcctccaaatgctgggttttcagctgcagatactcaactcaccaaagaaaatgcctttttacttttggattggattcgggaact |
2931448 |
T |
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| Q |
225 |
gaagtataggggagtgaacctacc |
248 |
Q |
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|||| ||| ||||||| ||||||| |
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| T |
2931447 |
gaagcataagggagtgcacctacc |
2931424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 2948294 - 2948098
Alignment:
| Q |
25 |
gagctaggaaaggcgtacctaaatgcatcttcttatgcaggccaatatacagattatgggaagcttattggtttcctcaaaacccatgttggagcttccg |
124 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| || || | |||||| ||||||||||| ||||||| |||||||| |
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| T |
2948294 |
gagctaggaaaggtgtacctaaaggcatcttcttatgcaggccaatgtacagattctgagatgtttattgctttcctcaaaagccatgttaaagcttccg |
2948195 |
T |
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| Q |
125 |
acataccttatatatctcctccaaatgctgggttttcagccgcagatacaccacttaccaaagaaaatgcccttttgcttttggattggattcagaa |
221 |
Q |
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|||| |||| |||| |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2948194 |
acatcccttttatacatcctccaaatgctgggttgtcagctgcagatacaacacttaccaaagaaaatgcctttttgcttttggattggattcagaa |
2948098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 2922316 - 2922079
Alignment:
| Q |
11 |
atgaaaattacatcgagctaggaaaggcgtacctaaatgcatcttcttatgcaggccaatatacagattatgggaagcttattggtttcctcaaaaccca |
110 |
Q |
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|||||||||| ||||||| ||||| | ||||||||| |||| ||| ||||||| |||| ||||| || | || ||| ||| |||||||| ||| || |
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| T |
2922316 |
atgaaaattatgtcgagcttggaaatgattacctaaattcatcatctcatgcaggtcaatttacaggttccgagatgctaattaatttcctcacaactca |
2922217 |
T |
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| Q |
111 |
tgttggagcttccgacataccttatatatctcctccaaatgctgggttttcagccgcagatacaccacttaccaaagaaaatgcccttttgcttttggat |
210 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||| |
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| T |
2922216 |
tgttggagcttctgacataccttatatatctcctccaaatgctgggttttccgccgttgatacaccacttaccaaagacaatgcctttttgcttttggat |
2922117 |
T |
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| Q |
211 |
tggattcagaaactgaagtataggggagtgaacctacc |
248 |
Q |
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||||||| ||| |||||||| | |||||| ||||||| |
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| T |
2922116 |
tggattcggaatctgaagtacaagggagtacacctacc |
2922079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 245
Target Start/End: Complemental strand, 37797151 - 37796931
Alignment:
| Q |
25 |
gagctaggaaaggcgtacctaaatgcatcttcttatgcaggccaatatacagattatgggaagcttattggtttcctcaaaacccatgttggagcttccg |
124 |
Q |
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||||| ||||||| |||||||||| | || |||||||||||||||| ||||| || || |||||||||| |||||||| ||| ||||||| |||||| | |
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| T |
37797151 |
gagctcggaaaggagtacctaaatacctcatcttatgcaggccaatttacaggttccggaaagcttattgatttcctcacaactcatgttgaagcttctg |
37797052 |
T |
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| Q |
125 |
acataccttatatatctcctccaaatgctgggttttcagccgcagatacaccacttaccaaagaaaatgcccttttgcttttggattggattcagaaact |
224 |
Q |
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|||| ||| |||||||||| |||||||||||||||||||| | || ||||||||||||||| | |||||| ||||||||||||||||||||| ||| || |
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| T |
37797051 |
acattcctcatatatctccaccaaatgctgggttttcagctgttgacacaccacttaccaaaaacaatgcctttttgcttttggattggattcggaatct |
37796952 |
T |
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| Q |
225 |
gaagtataggggagtgaacct |
245 |
Q |
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|||| | ||||||||| |||| |
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| T |
37796951 |
gaagcacaggggagtgcacct |
37796931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 3011098 - 3011340
Alignment:
| Q |
6 |
gagagatgaaaattacatcgagctaggaaaggcgtacctaaatgcatcttcttatgcaggccaatatacagattatgggaagcttattggtttcctcaaa |
105 |
Q |
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|||| |||||||||| | |||||||||||||| |||||||||| |||||||||||||||||| ||| |||| |||||| |||||| ||||||||| |
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| T |
3011098 |
gagaaatgaaaattatgttgagctaggaaaggcatacctaaatgattcttcttatgcaggccaacatatggattctgggaaatttattgaattcctcaaa |
3011197 |
T |
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| Q |
106 |
acccatgttggagcttccgacataccttatatatctcctccaaatgctgggttttcagccgcagatacaccacttaccaaagaaaatgcccttttgcttt |
205 |
Q |
| |
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|| |||||| |||||| |||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||||||| ||||| || | |||| |
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| T |
3011198 |
actcatgttaaagcttctgacataccttatatatctcctccaaatgctagattttcagctgcggatacaccacttaccaaagacaatgcatttctacttt |
3011297 |
T |
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| Q |
206 |
tggattggattcagaaactgaagtataggggagtgaacctacc |
248 |
Q |
| |
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|||| ||||||| | | |||||| | |||||||| ||||||| |
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| T |
3011298 |
tggagtggattcgggatctgaagaaaaggggagttcacctacc |
3011340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 28026005 - 28025926
Alignment:
| Q |
169 |
gatacaccacttaccaaagaaaatgcccttttgcttttggattggattcagaaactgaagtataggggagtgaacctacc |
248 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||| ||||||||||||||||| |
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| T |
28026005 |
gatacaccacttaccaaagaaaatgccttcttgcttttggattggattcggaacctgaagtccaggggagtgaacctacc |
28025926 |
T |
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