View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_low_40 (Length: 233)
Name: NF11125_low_40
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 35655734 - 35655520
Alignment:
| Q |
1 |
gtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35655734 |
gtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtga |
35655635 |
T |
|
| Q |
101 |
gctaaatcttggagtgatctgtgaggggacacaccaatttgatgaagattaccaagtataggaaatcttggaggtgaaggtggtaagnnnnnnngggtgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35655634 |
gctaaatcttggagtgatctgtgaggggacacaccaatttgatgaagattaccaagtataggaaatcttggaggtgaaggtggtaagtttttttgggtgg |
35655535 |
T |
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| Q |
201 |
cagaattgttggaat |
215 |
Q |
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||||||||||||||| |
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| T |
35655534 |
cagaattgttggaat |
35655520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 35641398 - 35641212
Alignment:
| Q |
1 |
gtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtga |
100 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| ||| ||||| |||||| |
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| T |
35641398 |
gtcatgagttttcattacctgacttgctgcatcagctgaggaaactacaaccactggtaccttccctaaataaagaagcattagaggaccatacttgtga |
35641299 |
T |
|
| Q |
101 |
gctaaatcttggagtgatctgtgaggggacacaccaatttgatgaagattaccaagtataggaaatcttggaggtgaaggtggtaag |
187 |
Q |
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| T |
35641298 |
gctaaatcttggagtgatctgtgagggaataagctaacttgatggagattaccaagtaaagggaatcttggaggtgaaggtggtaag |
35641212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 187
Target Start/End: Complemental strand, 35646317 - 35646132
Alignment:
| Q |
2 |
tcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtgag |
101 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35646317 |
tcatgagttttcattacttttcttgctgtatcagcagaggaaattacaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtgag |
35646218 |
T |
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| Q |
102 |
ctaaatcttggagtgatctgtgaggggacacaccaatttgatgaagattaccaagtataggaaatcttggaggtgaaggtggtaag |
187 |
Q |
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|||| ||||||| | || ||| ||| ||||| |||||| || |||||||||| ||||| ||||||||||||||| |||||| |
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| T |
35646217 |
ataaagtgtggagtgtgcggtaaggaaacaaaccaaattgatggaggttaccaagtagaggaattcttggaggtgaaggaggtaag |
35646132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 35676814 - 35676628
Alignment:
| Q |
1 |
gtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtga |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35676814 |
gtcatgagttttcattacttctcttgctgcatcagcagaggaaactacaaccaccggtaccttaccaaaataaagaagcattaaagggccatatttgtga |
35676715 |
T |
|
| Q |
101 |
gctaaatcttggagtgatctgtgaggggacacaccaatttgatgaagattaccaagtataggaaatcttggaggtgaaggtggtaag |
187 |
Q |
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||||||| |||||||| | |||||| | | |||| ||| || || |||||||||| ||||||||||||||||||||| |||||| |
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| T |
35676714 |
gctaaattttggagtgtgcaatgagggaataagccaagttggtggaggttaccaagtagaggaaatcttggaggtgaaggaggtaag |
35676628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 35673340 - 35673180
Alignment:
| Q |
14 |
attacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtgagctaaatcttgga |
113 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| || |
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| T |
35673340 |
attacttttcttgctgcatcagc-----aaac-acaagtactggaaccttcccaaaataaagaagcactaaagggccatttttgtgagctgaatcttaga |
35673247 |
T |
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| Q |
114 |
gtgatctgtgaggggacacaccaatttgatgaagattaccaagtataggaaatcttggaggtgaagg |
180 |
Q |
| |
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||| | |||| || | | |||| |||||| | || |||| || ||||||||||||||||||||| |
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| T |
35673246 |
gtgcacggtgaaggaataagccaagttgatggaagttgccaactagaggaaatcttggaggtgaagg |
35673180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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