View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_low_5 (Length: 664)
Name: NF11125_low_5
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 123 - 524
Target Start/End: Complemental strand, 20070631 - 20070230
Alignment:
| Q |
123 |
tagtaatagacttgttagtattttgcaactccagatttattatcttgtagagttgacttacaaatgactatagtcattgtgggtatgttggtcatttaat |
222 |
Q |
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| T |
20070631 |
tagtgatagaattattagtattttgcaactccagatttattatcttgtagagttgacttacaaatgactatagtcattgtgggtatgttggtgatttaat |
20070532 |
T |
|
| Q |
223 |
tgtggtataacttca-ttttaaggcattcaaaatcctcataatgcgaaccttattaaaattttcaagtttgtaggctcatgtccacgtactcattaagga |
321 |
Q |
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| T |
20070531 |
tgtggtataacttcaattttaaggcattcaaaatcctcataatgcgaaccttatttaatttttcaagtttgtaggctcatgtccacgtactcattaag-a |
20070433 |
T |
|
| Q |
322 |
tctggtatgggttttcctaattatcaataagtttcccttggtaggcattttattttacatccactgtttggagtactaaatctcccagtttaaagtcagt |
421 |
Q |
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| T |
20070432 |
tcttgtatgggttttcctaattatcaataagttccccttggtagacattgttttttacatccactgtttggagtactaaatctcccagtttaaagtcagt |
20070333 |
T |
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| Q |
422 |
catatgggatcaccttatagttgtagtgggctttaacatgtcgtttaaccagatctacttataccgataccacttatactttcacccctacaaaccattg |
521 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20070332 |
catatgggatccccttatagttgtagtgggctttaacatttcgtttaaccagatctacttataccgataccacttatactttaacccctacaaaccattg |
20070233 |
T |
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| Q |
522 |
aaa |
524 |
Q |
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||| |
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| T |
20070232 |
aaa |
20070230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 20071289 - 20071179
Alignment:
| Q |
14 |
agagaaaggttggacaaaatgtacaaatcaataaacaccatgatcacagatttcacaagattcaaagaaaggaatcaagttaccaatcaaatgggaatgg |
113 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20071289 |
agagaaatgttggacaaaatgtacaaatcgataaacaccatgatcatggatttcacaagattcaaagaaaggaatcaggttaccaatcaaatgggaatga |
20071190 |
T |
|
| Q |
114 |
cagtggagcta |
124 |
Q |
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|||||||||| |
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| T |
20071189 |
gagtggagcta |
20071179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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