View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11125_low_6 (Length: 623)

Name: NF11125_low_6
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11125_low_6
NF11125_low_6
[»] chr1 (2 HSPs)
chr1 (8-282)||(2784919-2785193)
chr1 (410-609)||(2785330-2785529)
[»] chr5 (8 HSPs)
chr5 (95-282)||(22526021-22526214)
chr5 (528-602)||(22524063-22524137)
chr5 (442-525)||(22525506-22525589)
chr5 (528-602)||(22534324-22534398)
chr5 (442-525)||(22531379-22531462)
chr5 (445-525)||(22534687-22534770)
chr5 (151-225)||(22535034-22535108)
chr5 (529-602)||(22530963-22531036)
[»] chr7 (2 HSPs)
chr7 (154-282)||(29438070-29438198)
chr7 (442-524)||(29438615-29438697)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 2784919 - 2785193
Alignment:
Q  8 cagcacagacacaataacaattgtccaataacaaatagcaaggtatgtaatgtaaggtgaaaaaccataaaactgttgaaatattataataaatggtatc 107  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2784919 cagcacaaacacgataacaattgtccaataacaaatagcaaggtatgtaatgtaaggtgaaaaaccataaaactgttgaaatattataataaatggtatc 2785018  T
Q  108 cccaaaacatgacttttgtgtcaatcttggggaacctgtatcagagaatgacctaactcatgaaatttcctcgaccactgtttgtagctccttgtgatga 207  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785019 cccaaaacatgacttttgtgtcaatcttgtggaacctgtatcagagaatgacctaactcatgaaatttcctcgaccactgtttgtagctccttgtgatga 2785118  T
Q  208 aacttgtccctgagaaactgtttgtgagcgcccaggatcttgaacatagttttgaccccttccagcaccaaccat 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785119 aacttgtccctgagaaactgtttgtgagcgcccaggatcttgaacatagttttgaccccttccagcaccaaccat 2785193  T

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Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 410 - 609
Target Start/End: Original strand, 2785330 - 2785529
Alignment:
Q  410 gacaatggtggcttagttacaaccatctccttaggaaaaatcatcccaatcaagcggtaaggtttgtctgaaacagacattagcaacgtctgtgatggca 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2785330 gacaatggtggcttagttacaaccatctccttaggaaaaatcatcccgatcaagcggcaaggtttgtctgaaacagacattagcaacgtctgtgatggca 2785429  T
Q  510 attgaataactgcacattgcttcttttccttcagctgaccaagaaaaccgtgctggttcattgcccgaaaaactaggaaatctgcctttcctatatactg 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785430 attgaataactgcacattgcttcttttccttcagctgaccaagaaaaccgtgctggttcattgcccgaaaaactaggaaatctgcctttcctatatactg 2785529  T

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Target: chr5 (Bit Score: 110; Significance: 4e-55; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 95 - 282
Target Start/End: Complemental strand, 22526214 - 22526021
Alignment:
Q  95 aataaatggtatccccaaaacatgactt---ttgtgtcaatcttggggaacctgtatcagagaatgacctaactcatgaaatttcctcgaccactgtttg 191  Q
    ||||||| | |||||||||||||||||    ||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| |||| ||||||    
T  22526214 aataaatagaatccccaaaacatgactggtgttgtgtcaatcttggggaagctgtatcagagaatgagctaactcatgaaattccctccaccaatgtttg 22526115  T
Q  192 tagctccttgtgatgaaacttgtccctgagaaactgtttgtgagcg---cccaggatcttgaacatagttttgaccccttccagcaccaaccat 282  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||   ||||||| ||||||||||| |||||||| ||||||||||||||||    
T  22526114 tagctccctgtgatgaaacttgtccctgagaaaccatttgtgagcgccccccaggaccttgaacataggtttgacccattccagcaccaaccat 22526021  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 528 - 602
Target Start/End: Complemental strand, 22524137 - 22524063
Alignment:
Q  528 gcttcttttccttcagctgaccaagaaaaccgtgctggttcattgcccgaaaaactaggaaatctgcctttccta 602  Q
    |||||||||||| |||||||||||||||||| ||| |||||||||||||||| ||||| ||||||||||||||||    
T  22524137 gcttcttttcctgcagctgaccaagaaaaccatgcgggttcattgcccgaaatactagaaaatctgcctttccta 22524063  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 442 - 525
Target Start/End: Complemental strand, 22525589 - 22525506
Alignment:
Q  442 aggaaaaatcatcccaatcaagcggtaaggtttgtctgaaacagacattagcaacgtctgtgatggcaattgaataactgcaca 525  Q
    |||||||| |||||| ||||||||| | | ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||    
T  22525589 aggaaaaagcatcccgatcaagcggcaggctttgtctgacacagatagtagcaacgtctgtgatggcaattgaataactgcaca 22525506  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 528 - 602
Target Start/End: Complemental strand, 22534398 - 22534324
Alignment:
Q  528 gcttcttttccttcagctgaccaagaaaaccgtgctggttcattgcccgaaaaactaggaaatctgcctttccta 602  Q
    |||| ||||| | |||||||||||||||||| ||  ||||||||||||||||||||||||||||||| |||||||    
T  22534398 gctttttttcttgcagctgaccaagaaaaccatgtgggttcattgcccgaaaaactaggaaatctgcgtttccta 22534324  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 442 - 525
Target Start/End: Complemental strand, 22531462 - 22531379
Alignment:
Q  442 aggaaaaatcatcccaatcaagcggtaaggtttgtctgaaacagacattagcaacgtctgtgatggcaattgaataactgcaca 525  Q
    |||||||| || ||| ||||||||| | | ||||||||| ||||| | |||||||||||||||| |||||||||||||||||||    
T  22531462 aggaaaaagcacccccatcaagcggcaggctttgtctgacacagatagtagcaacgtctgtgattgcaattgaataactgcaca 22531379  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 445 - 525
Target Start/End: Complemental strand, 22534770 - 22534687
Alignment:
Q  445 aaaaatcatcccaatcaagcggta--aggtt-tgtctgaaacagacattagcaacgtctgtgatggcaattgaataactgcaca 525  Q
    ||||| |||||||||||||||| |  ||| | |||| |||||||| | |||||| |||||||||||||||||||||||||||||    
T  22534770 aaaaagcatcccaatcaagcggcagcaggctatgtcagaaacagatagtagcaaagtctgtgatggcaattgaataactgcaca 22534687  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 22535108 - 22535034
Alignment:
Q  151 gagaatgacctaactcatgaaatttcctcgaccactgtttgtagctccttgtgatgaaacttgtccctgagaaac 225  Q
    |||||||| ||||||||| ||||| |||    || |||||||||| |||||||||||||| ||||| ||||||||    
T  22535108 gagaatgaactaactcatcaaattcccttcttcaatgtttgtagcaccttgtgatgaaacgtgtccttgagaaac 22535034  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 602
Target Start/End: Complemental strand, 22531036 - 22530963
Alignment:
Q  529 cttcttttccttcagctgaccaagaaaaccgtgctggttcattgcccgaaaaactaggaaatctgcctttccta 602  Q
    ||||||||||| |||  ||||||| ||||| |||  |||  ||||||| ||||||||||||||||||| |||||    
T  22531036 cttcttttcctgcagaagaccaaggaaaccatgcgtgtttcttgcccggaaaactaggaaatctgcctctccta 22530963  T

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Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 154 - 282
Target Start/End: Original strand, 29438070 - 29438198
Alignment:
Q  154 aatgacctaactcatgaaatttcctcgaccactgtttgtagctccttgtgatgaaacttgtccctgagaaactgtttgtgagcgcccaggatcttgaaca 253  Q
    ||||| ||||||||||||||| | || | || |||||||||||| ||||||||||||||| ||||| |||||  |||||||| | |||||| ||||||||    
T  29438070 aatgagctaactcatgaaattccttccatcaatgtttgtagctcgttgtgatgaaacttgaccctgggaaaccatttgtgagtgtccaggaccttgaaca 29438169  T
Q  254 tagttttgaccccttccagcaccaaccat 282  Q
     || |||||||| ||||  ||||||||||    
T  29438170 caggtttgacccattccgacaccaaccat 29438198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 524
Target Start/End: Original strand, 29438615 - 29438697
Alignment:
Q  442 aggaaaaatcatcccaatcaagcggtaaggtttgtctgaaacagacattagcaacgtctgtgatggcaattgaataactgcac 524  Q
    ||||| || ||||||||||||  |||  ||||| || |||||| | |  ||||| ||||||||||||||||||||||||||||    
T  29438615 aggaataaacatcccaatcaactggttgggtttttcagaaacaaatagcagcaatgtctgtgatggcaattgaataactgcac 29438697  T

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