View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_low_7 (Length: 617)
Name: NF11125_low_7
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 612
Target Start/End: Complemental strand, 388473 - 387884
Alignment:
| Q |
19 |
ctttgcagctgcttttccagctgctgcagcctctgcttgagccaacttggacatgttcttgtgaagctcagcgttcagtgttgccaatgctacctcagtt |
118 |
Q |
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| T |
388473 |
ctttgcagctgcttttccagctgctgcagcctctgcttgagccaacttggacatgttcttgtgaagctcagcgttcattgttgccaatgctacctcagtt |
388374 |
T |
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| Q |
119 |
tcactccctctttccttcaacatcttcagctcggttttcgttttctcaagctctgcctccagcttctttactgtatcaaaaatgttgttnnnnnnnnnnn |
218 |
Q |
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| T |
388373 |
tcactccctctttccttcaacatcttcagctcggttttcgttttctcaagctctgcctccagcttctttattgtatcaaaaatgttgttttcttcttctt |
388274 |
T |
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| Q |
219 |
nnnnnntaaatggtggtttgatgggactaattggtgatggtgatgacggcattgatctccacgatggttctctcttaatagttaccgaaggagaataata |
318 |
Q |
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| T |
388273 |
ctt---taaatggtggtttgatgggactaattggtgatggtgatgacggcattgatctccacgatggttctctcttaatagttaccgaaggagaataata |
388177 |
T |
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| Q |
319 |
aggtgcggtactggaagtgtctgagaatgagaatggttttggagatggagagtatatttctccaacaagaagccgttctccgaagatggctacggcttct |
418 |
Q |
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| T |
388176 |
aggtgcggtactggaagtgtctgagaatgagaatggttttggagatggagagtatatttctccaacaagaagccgttctccgaagatggctacggcttct |
388077 |
T |
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| Q |
419 |
ttgacggagctgaaaggacgagaggtgtccacggtggagctataatcagcggtaggggtcaccgacataggttcatgttccattgtannnnnnnnnnnnn |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
388076 |
ttgacggagctgaaaggacgagaggtgtccacggtggagctataatcagcggtaggggtcaccgacataggttcatgttccattgta-tttgttttgttt |
387978 |
T |
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| Q |
519 |
nnnnnnnnaaggatatgggaattgttatgatcagtactagtatttgtttgaagccaggttggtgttttaattaattgttggtttctctgcttct |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
387977 |
gttgaaggaaggatatgggaattgttatgatcagtactagtatttgtttgaagccaggttggtgttttaattaattgttggtttctttgcttct |
387884 |
T |
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