View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11125_low_8 (Length: 602)
Name: NF11125_low_8
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11125_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 572; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 18 - 601
Target Start/End: Original strand, 8004345 - 8004928
Alignment:
| Q |
18 |
aagagcaagctcaggattatcaagcaaaccagtaataagcacaagcacctgaaagtaccaaatctccaagcaaagcataaccgcagaagcacttgataat |
117 |
Q |
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| T |
8004345 |
aagagcaagctcaggattatcaagcaaaccagtaataagcacaagcacctgaaagtaccaaatctccaagcaaagcataaccgcagaagcacttgataat |
8004444 |
T |
|
| Q |
118 |
ttcacaaaatcccaaagtttgtaaaaagcctcagcactaaacccattccaagtacgttcacactttcttgatttaactatgtacacaaactgggccacca |
217 |
Q |
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| T |
8004445 |
ttcacaaaatcccaaagtttgtaaaaagcctcaacactaaacccattccaagtacgttcacactttcttgatttaactatgtacacaaactgggccacca |
8004544 |
T |
|
| Q |
218 |
caataacccaccaacaaaaactcaaaaccaatgatgacccaattaggcccaagcccaacttgaaaaccgcaacccaactaagcaacacatgtaacacaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004545 |
caataacccaccaacaaaaactcaaaaccaatgatgacccaattaggcccaagcccaacttgaaaaccgcaacccaactaagcaacacatgtaacacaag |
8004644 |
T |
|
| Q |
318 |
tgttgctaccgagatgtaagtgctaggccgaactatgctttgcgcttggagaaatttttgtatggggaagttcaccgcgtaagcgaagatctgtgggatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004645 |
tgttgctaccgagatgtaagtgctaggccgaactatgctttgcgcttggagaaatttttgtatggggaagttcaccgcgtaagcgaagatctgtgggatc |
8004744 |
T |
|
| Q |
418 |
aaaccgtacacgtatgtggctgcagaagatgccaatggctctgattcacctattaagagtaagattggtttgcagaaaatgtagactatggttaagggaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004745 |
aaaccgtacacgtatgtggctgcagaagatgccaatggctctgattcacctattaagagtaagattggtttgcagaaaatgtagactatggttaagggaa |
8004844 |
T |
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| Q |
518 |
ttgctgttatggtcaatactattgttgctctttgcatgtatattcctagcatttcatatttgtttgcaccctatgcttctccac |
601 |
Q |
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| T |
8004845 |
ttgctgttatggtcaatactattgttgctctttgcatgtatattcctagcatttcatatttgtttgcaccatatgcttgtccac |
8004928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 37264685 - 37264645
Alignment:
| Q |
211 |
gccaccacaataacccaccaacaaaaactcaaaaccaatga |
251 |
Q |
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| T |
37264685 |
gccacaacaataacccaccaagaaaaactcaaaaccaatga |
37264645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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