View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11125_low_9 (Length: 585)

Name: NF11125_low_9
Description: NF11125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11125_low_9
NF11125_low_9
[»] chr5 (7 HSPs)
chr5 (106-572)||(1587269-1587735)
chr5 (272-572)||(1590654-1590954)
chr5 (378-540)||(1580801-1580963)
chr5 (378-540)||(1603852-1604014)
chr5 (116-334)||(1581034-1581243)
chr5 (116-334)||(1603572-1603781)
chr5 (20-82)||(1588267-1588329)
[»] chr3 (1 HSPs)
chr3 (106-568)||(19270050-19270533)
[»] chr7 (2 HSPs)
chr7 (289-540)||(39615906-39616175)
chr7 (17-73)||(39614973-39615029)


Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 106 - 572
Target Start/End: Complemental strand, 1587735 - 1587269
Alignment:
Q  106 ttataacatcacctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg 205  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587735 ttataacatcacctggttattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg 1587636  T
Q  206 ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtcca 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1587635 ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattgtgaactctctaaaagaagggtcca 1587536  T
Q  306 acacgatcacttctaaaccaaccggtttatcactttcatccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgatt 405  Q
    ||||  |||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587535 acacagtcacttctaaaccatcctgtttattactttcatccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgatt 1587436  T
Q  406 ttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587435 ttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggc 1587336  T
Q  506 aatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtct 572  Q
    |||||||||||||||||||||||||||| |||||||||       ||||| ||||||||||||||||    
T  1587335 aatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtct 1587269  T

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Target: chr5; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 272 - 572
Target Start/End: Original strand, 1590654 - 1590954
Alignment:
Q  272 aaagacattctgaactctctaaaagaagggtccaacacgatcacttctaaaccaaccggtttatcactttcatccttttctatgtcggtgagaaaatcaa 371  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1590654 aaagacattctgaactctctaaaagaagggtccaacacaatcacttctaaaccaaccggtttatcactttcatccttttctatgtcggtgagaaaatcga 1590753  T
Q  372 ctttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccatt 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1590754 ctttgacttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaattttttacacatgatatttttgatatcagtgccatt 1590853  T
Q  472 aaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtc 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||| |||||||||||||||    
T  1590854 aaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtc 1590953  T
Q  572 t 572  Q
    |    
T  1590954 t 1590954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 378 - 540
Target Start/End: Complemental strand, 1580963 - 1580801
Alignment:
Q  378 cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 477  Q
    |||||||||| | ||||||||||||| ||||||  |  |||||||||||  || ||||||  ||||||||||||| |||||||||||||||||| |||||    
T  1580963 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc 1580864  T
Q  478 tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc 540  Q
    |||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| ||||||    
T  1580863 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatc 1580801  T

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Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 378 - 540
Target Start/End: Original strand, 1603852 - 1604014
Alignment:
Q  378 cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 477  Q
    |||||||||| | ||||||||||||| ||||||  |  |||||||||||  || ||||||  ||||||||||||| |||||||||||||||||| |||||    
T  1603852 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc 1603951  T
Q  478 tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc 540  Q
    |||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| ||||||    
T  1603952 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatc 1604014  T

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Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 116 - 334
Target Start/End: Complemental strand, 1581243 - 1581034
Alignment:
Q  116 acctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgctcacaacag 215  Q
    |||| ||| ||||| |||| |||||||||||||  |||||||||||| ||||| ||||||||||||| |||  ||| |||||||||||  |||| ||||     
T  1581243 acctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacat 1581144  T
Q  216 ttttccaaccacgtagaagactgtaat-acttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaacacgatca 314  Q
     ||||||| |  ||| ||||||||||  |||| |          || ||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  1581143 gtttccaatcttgtacaagactgtaaagactttt----------gccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatca 1581054  T
Q  315 cttctaaaccaaccggttta 334  Q
    |||||| ||||||| |||||    
T  1581053 cttctataccaaccagttta 1581034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 116 - 334
Target Start/End: Original strand, 1603572 - 1603781
Alignment:
Q  116 acctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgctcacaacag 215  Q
    |||| ||| ||||| |||| |||||||||||||  |||||||||||| ||||| ||||||||||||| |||  ||| |||||||||||  |||| ||||     
T  1603572 acctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacat 1603671  T
Q  216 ttttccaaccacgtagaagactgtaat-acttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaacacgatca 314  Q
     ||||||| |  ||| ||||||||||  |||| |          || ||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  1603672 gtttccaatcttgtacaagactgtaaagactttt----------gccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatca 1603761  T
Q  315 cttctaaaccaaccggttta 334  Q
    |||||| ||||||| |||||    
T  1603762 cttctataccaaccagttta 1603781  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 1588329 - 1588267
Alignment:
Q  20 cttaaggtgtcatagccaaatttttaaaagcaacatactataaaacattttgcaatgctaact 82  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  1588329 cttaaggtgtcagagtcaaatttttaaaagcaacatactataaaacattttgcaatgctaact 1588267  T

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Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 106 - 568
Target Start/End: Original strand, 19270050 - 19270533
Alignment:
Q  106 ttataacatcacctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg 205  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  19270050 ttataacatcacctgattattgtcgagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttaagttttttacccttttcaaaactatttttg 19270149  T
Q  206 ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtcca 305  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  19270150 ctcacaacagttttccaaccatgtacaagactgtaatacttgttaatgcccatgctccacttcctcaacgacattgtgaactctctaaaagaagggtcca 19270249  T
Q  306 acacgatcacttctaaaccaaccggtttatcactttcatcc---------------------ttttctatgtcggtgagaaaatcaactttgacttcttt 384  Q
    |||| ||||||||||||||||| ||||| | | ||||||||                     ||||||||||||||||||||||||||||||||||||||    
T  19270250 acacaatcacttctaaaccaactggtttgttattttcatcctttttagttaaagacacgtctttttctatgtcggtgagaaaatcaactttgacttcttt 19270349  T
Q  385 aagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatc 484  Q
    || || |||||| |||||||||||||||||  |||||| ||| ||| |||||||||||| |||||||| |||||||||||||||||| ||||||||||||    
T  19270350 aatcgacattaatagacgattttggtcatctttgagatttgatgcaaacaattttttacccatgatatatttgatatcagtgccattcaactctttgatc 19270449  T
Q  485 ttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtg 568  Q
    |||||||| | |||||||||||||||||||||||| ||||||||||||| |||||| ||       ||||||||||||||||||    
T  19270450 ttgttctctatgtgaataggcaatattggtggaggagatgacaaattttccttatcttgtttttttggtttcatcttcttcgtg 19270533  T

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Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 289 - 540
Target Start/End: Original strand, 39615906 - 39616175
Alignment:
Q  289 tctaaaagaagggtccaacacgatcacttctaaaccaaccggtttatcactttcatccttttc----------------tatgtc--ggtgagaaaatca 370  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||  |||||||||||||                | ||||  |||||||||| ||    
T  39615906 tctaaaataagggtccaacacaatcacttctaaaccaaccggtttatcgttttcatccttttcatctaaagtctccttttctgtcttggtgagaaaacca 39616005  T
Q  371 actttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccat 470  Q
    | || | |||||||||| ||||||||||||||| ||||| | ||   || |||||||||| ||||||| ||  ||||||||| | |||||||||||||||    
T  39616006 agttcgtcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccat 39616105  T
Q  471 taaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc 540  Q
    | ||||| |||||||||||||  || | |||||| |||||||| |||||| | | |||||||||||||||    
T  39616106 tcaactccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaaatttttcttatc 39616175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 39614973 - 39615029
Alignment:
Q  17 tcacttaaggtgtcatagccaaatttttaaaagcaacatactataaaacattttgca 73  Q
    |||| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||    
T  39614973 tcacctaaggtgtcatagtcaaattgttaaaagcaacataatataaaacattttgca 39615029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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