View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11126_high_13 (Length: 305)

Name: NF11126_high_13
Description: NF11126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11126_high_13
NF11126_high_13
[»] chr5 (2 HSPs)
chr5 (17-287)||(20528094-20528368)
chr5 (195-287)||(20532439-20532531)
[»] chr7 (2 HSPs)
chr7 (17-228)||(3035016-3035230)
chr7 (206-274)||(3012763-3012830)
[»] chr8 (1 HSPs)
chr8 (207-274)||(2084242-2084309)
[»] chr4 (1 HSPs)
chr4 (206-249)||(34724714-34724757)
[»] chr3 (1 HSPs)
chr3 (31-80)||(20541630-20541679)
[»] chr6 (1 HSPs)
chr6 (17-65)||(17535155-17535203)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 20528368 - 20528094
Alignment:
Q  17 catcacacatagggatagaaggttctgcaaaatttgcagaatccaccatggatgaatgcttagagtttgagaggaagaagatgaaggaacaagcgtaaca 116  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  20528368 catcacacatagggatagaaggttctacgaaatttgcagaatccaccatggatgaatgcatagagtttgagaggaataagatgaaggaacaagcgtaaca 20528269  T
Q  117 agattgtaacaaaat--ttcttaccaaaagttatgctttcgaattcttggtacaagccctaaccagactctgataccacctgtaaggagaaattcatttg 214  Q
    ||||||||| ||||   ||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20528268 agattgtaaaaaaaaaattcttaccagaagttgtgctttctaattcttggtacaagccctaaccagactctgataccacctgtaaggagaaattcatttg 20528169  T
Q  215 ttattcattcaagtgaagattacatcaagtag--atacctatttatagtaaagtatccaagtgtatgatctagct 287  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  20528168 ttattcattcaagtgaagattacatcaagtagatatacctatttatagtaaagtatccaagtgtatgatctagct 20528094  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 20532531 - 20532439
Alignment:
Q  195 tgtaaggagaaattcatttgttattcattcaagtgaagattacatcaagtagatacctatttatagtaaagtatccaagtgtatgatctagct 287  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||  |||||||||| ||||||    
T  20532531 tgtaaggagaatttcattttttattcattcaagtgaagattacatcaagtagatacttatttataatcaagtatataagtgtatgagctagct 20532439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 3035230 - 3035016
Alignment:
Q  17 catcacacatagggatagaaggttctgcaaaatttgcagaatccaccatggatgaatgcttagagtttgagaggaagaagatgaaggaacaagcgtaaca 116  Q
    ||||| || |||| |||||||| | ||  |||||||||||||||||||||||||||||||| ||||||||||||||||||| | || || | ||||||||    
T  3035230 catcaaacttaggaatagaaggctgtgagaaatttgcagaatccaccatggatgaatgcttggagtttgagaggaagaagaaggagcaatacgcgtaaca 3035131  T
Q  117 agattgtaacaaaatttcttacc--aaaagttatgctttcgaattcttggtacaagccctaac-cagactct-gataccacctgtaaggagaaattcatt 212  Q
    | | ||||||||| |||| | ||  |||||||  |||||| ||||  | |||||||||||||| ||| |||| |||||||  |||||||||||| |  ||    
T  3035130 a-actgtaacaaactttcctgccaaaaaagttgcgctttctaatttgttgtacaagccctaacacaggctctagataccaattgtaaggagaaaatggtt 3035032  T
Q  213 tgttattcattcaagt 228  Q
    ||||||||||||||||    
T  3035031 tgttattcattcaagt 3035016  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 3012763 - 3012830
Alignment:
Q  206 attcatttgttattcattcaagtgaagattacatcaagtagatacctatttatagtaaagtatccaagt 274  Q
    |||||||||||||||||| |  |||| ||||||| ||||| |||||||||||||| ||| |||| ||||    
T  3012763 attcatttgttattcattgagttgaaaattacat-aagtaaatacctatttataggaaattatctaagt 3012830  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 2084309 - 2084242
Alignment:
Q  207 ttcatttgttattcattcaagtgaagattacatcaagtagatacctatttatagtaaagtatccaagt 274  Q
    ||||||||||||| ||| || |||| |||| ||||||| |||||||||||||||| ||||||||||||    
T  2084309 ttcatttgttattgattgaattgaaaattatatcaagtggatacctatttatagttaagtatccaagt 2084242  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 249
Target Start/End: Complemental strand, 34724757 - 34724714
Alignment:
Q  206 attcatttgttattcattcaagtgaagattacatcaagtagata 249  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  34724757 attcatttgttattcattcaagcgaaaattacatcaagtagata 34724714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 20541679 - 20541630
Alignment:
Q  31 atagaaggttctgcaaaatttgcagaatccaccatggatgaatgcttaga 80  Q
    ||||||||||  || ||||||||||||||| ||||||||||| |||||||    
T  20541679 atagaaggttgagcgaaatttgcagaatccgccatggatgaaagcttaga 20541630  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 17535203 - 17535155
Alignment:
Q  17 catcacacatagggatagaaggttctgcaaaatttgcagaatccaccat 65  Q
    ||||| || ||||||||||||||| ||||||||||||| ||||| ||||    
T  17535203 catcaaacttagggatagaaggttgtgcaaaatttgcaaaatccgccat 17535155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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