View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11126_high_19 (Length: 248)
Name: NF11126_high_19
Description: NF11126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11126_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 26183116 - 26182892
Alignment:
| Q |
6 |
agcagcacagatcttcttcaacctcaacaacatcttcaaagctaggagttgacaaagattcacaagtaatatcaaaagtgaagccaaagatccgaataat |
105 |
Q |
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| T |
26183116 |
agcaacacacatcttcttcaacctcaacaacatcttcaaagctaggagttgacaaagattcacaagtaatatcaaaagtgaagccaaagatccgaataat |
26183017 |
T |
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| Q |
106 |
tcacatatatgctccagaaatcataaaaactgatgctgcaaatttcagagagcttgttcaaagactcacaggaaagccagaagatcatgaaaagggaggt |
205 |
Q |
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| T |
26183016 |
tcatatatatgctccagaaatcataaaaactgatgctgcaaatttcagagagcttgttcaaagactcacaggaaagccagaagagcatgaaaggggaggt |
26182917 |
T |
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| Q |
206 |
gcaagaagcaaatccaagactgcac |
230 |
Q |
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| T |
26182916 |
gcaagaagcaaatccaagactgcac |
26182892 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 23040608 - 23040700
Alignment:
| Q |
73 |
aatatcaaaagtgaagccaaagatccgaataattcacatatatgctccagaaatcataaaaactgatgctgcaaatttcagagagcttgttca |
165 |
Q |
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|||||||||| |||| || ||||| |||||||||||| |||| || || || ||||| ||||||||||||| |||||| || || |||||||| |
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| T |
23040608 |
aatatcaaaaatgaaacctaagatacgaataattcacgtatacgcacccgagatcatcaaaactgatgctgaaaattttagggaacttgttca |
23040700 |
T |
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