View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11126_high_21 (Length: 240)

Name: NF11126_high_21
Description: NF11126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11126_high_21
NF11126_high_21
[»] chr1 (9 HSPs)
chr1 (37-120)||(13463816-13463899)
chr1 (57-100)||(18750206-18750249)
chr1 (49-95)||(179827-179873)
chr1 (49-99)||(18597089-18597139)
chr1 (50-98)||(8402110-8402158)
chr1 (59-98)||(3650803-3650842)
chr1 (49-92)||(22348261-22348304)
chr1 (37-98)||(11949163-11949224)
chr1 (66-100)||(35197953-35197987)
[»] chr8 (13 HSPs)
chr8 (37-98)||(36577971-36578032)
chr8 (49-100)||(4838716-4838767)
chr8 (53-100)||(26872660-26872707)
chr8 (49-98)||(4836501-4836550)
chr8 (49-98)||(4841946-4841995)
chr8 (53-100)||(26875118-26875165)
chr8 (49-98)||(2750241-2750290)
chr8 (57-92)||(23091562-23091597)
chr8 (49-100)||(17663632-17663683)
chr8 (49-100)||(17682788-17682839)
chr8 (49-83)||(8550728-8550762)
chr8 (49-94)||(15182044-15182089)
chr8 (49-98)||(39658343-39658392)
[»] chr2 (25 HSPs)
chr2 (37-102)||(22186070-22186135)
chr2 (37-99)||(25262572-25262635)
chr2 (53-100)||(20622454-20622501)
chr2 (57-100)||(21851538-21851581)
chr2 (57-100)||(21859973-21860016)
chr2 (49-99)||(33308186-33308237)
chr2 (49-99)||(27425289-27425339)
chr2 (49-99)||(27440335-27440385)
chr2 (58-100)||(34543046-34543088)
chr2 (37-94)||(25995531-25995588)
chr2 (49-98)||(39756290-39756339)
chr2 (57-100)||(17686378-17686421)
chr2 (59-98)||(21322005-21322044)
chr2 (52-93)||(25193113-25193154)
chr2 (63-100)||(34529072-34529109)
chr2 (57-125)||(28479936-28480004)
chr2 (65-100)||(4281573-4281608)
chr2 (57-100)||(21150026-21150069)
chr2 (57-100)||(26718656-26718698)
chr2 (57-100)||(26732844-26732886)
chr2 (49-99)||(44373732-44373782)
chr2 (49-99)||(44389643-44389693)
chr2 (50-100)||(11625983-11626033)
chr2 (57-98)||(35038870-35038910)
chr2 (57-97)||(27605541-27605581)
[»] chr5 (15 HSPs)
chr5 (37-100)||(23568453-23568516)
chr5 (57-102)||(31549531-31549576)
chr5 (53-100)||(31411810-31411857)
chr5 (53-100)||(31422718-31422765)
chr5 (51-97)||(29189248-29189294)
chr5 (49-98)||(2826866-2826915)
chr5 (57-98)||(29185268-29185309)
chr5 (60-100)||(8949134-8949174)
chr5 (50-100)||(41669291-41669341)
chr5 (50-100)||(41684098-41684148)
chr5 (57-98)||(20371908-20371948)
chr5 (57-98)||(20397632-20397672)
chr5 (50-99)||(24611528-24611577)
chr5 (50-99)||(24693919-24693968)
chr5 (37-101)||(16668551-16668615)
[»] chr7 (22 HSPs)
chr7 (37-120)||(27967366-27967450)
chr7 (37-120)||(27976819-27976903)
chr7 (49-98)||(15974736-15974785)
chr7 (45-99)||(5200600-5200655)
chr7 (45-99)||(5209729-5209784)
chr7 (57-100)||(17515790-17515833)
chr7 (57-100)||(17537381-17537424)
chr7 (57-100)||(38411786-38411829)
chr7 (49-99)||(4185176-4185226)
chr7 (57-100)||(559883-559926)
chr7 (57-100)||(569792-569835)
chr7 (49-98)||(48305444-48305493)
chr7 (57-93)||(16474424-16474460)
chr7 (68-100)||(16911193-16911225)
chr7 (57-100)||(1887939-1887981)
chr7 (57-100)||(1902040-1902082)
chr7 (57-100)||(24187138-24187180)
chr7 (51-98)||(28396930-28396977)
chr7 (37-100)||(32090844-32090907)
chr7 (60-98)||(16544220-16544258)
chr7 (60-98)||(16621404-16621442)
chr7 (50-99)||(13737297-13737346)
[»] chr3 (20 HSPs)
chr3 (37-120)||(1005727-1005811)
chr3 (50-98)||(52987451-52987499)
chr3 (49-100)||(4444347-4444398)
chr3 (57-125)||(16289553-16289621)
chr3 (49-95)||(31852325-31852371)
chr3 (49-98)||(50754220-50754269)
chr3 (60-100)||(4504930-4504970)
chr3 (57-100)||(1775840-1775883)
chr3 (57-100)||(4887693-4887736)
chr3 (57-100)||(5517767-5517810)
chr3 (61-100)||(11262287-11262326)
chr3 (57-99)||(2216562-2216604)
chr3 (57-95)||(13603387-13603425)
chr3 (57-98)||(18954624-18954664)
chr3 (59-100)||(20053181-20053222)
chr3 (59-100)||(20075841-20075882)
chr3 (57-100)||(27551888-27551930)
chr3 (57-100)||(28469261-28469303)
chr3 (49-98)||(9184899-9184948)
chr3 (66-100)||(23755544-23755578)
[»] chr6 (22 HSPs)
chr6 (37-100)||(30996949-30997013)
chr6 (57-120)||(27048655-27048718)
chr6 (57-120)||(27058899-27058962)
chr6 (50-103)||(20216018-20216071)
chr6 (50-103)||(22110039-22110092)
chr6 (49-100)||(24296429-24296480)
chr6 (49-100)||(24310460-24310511)
chr6 (54-100)||(5995689-5995735)
chr6 (49-102)||(24919169-24919222)
chr6 (58-102)||(5488164-5488208)
chr6 (57-100)||(3042401-3042444)
chr6 (49-98)||(877419-877468)
chr6 (57-102)||(15390679-15390724)
chr6 (57-102)||(16587809-16587854)
chr6 (57-102)||(16607526-16607571)
chr6 (59-98)||(1141767-1141806)
chr6 (49-100)||(17092468-17092519)
chr6 (50-99)||(13289784-13289833)
chr6 (50-99)||(13304751-13304800)
chr6 (49-82)||(24737490-24737523)
chr6 (57-100)||(19827583-19827625)
chr6 (49-98)||(33346171-33346220)
[»] chr4 (16 HSPs)
chr4 (53-100)||(12997531-12997578)
chr4 (49-102)||(52296730-52296783)
chr4 (56-100)||(4749045-4749089)
chr4 (49-90)||(638076-638117)
chr4 (51-100)||(32215923-32215972)
chr4 (58-102)||(772287-772331)
chr4 (58-102)||(20866839-20866883)
chr4 (49-98)||(26447212-26447261)
chr4 (57-100)||(5405294-5405337)
chr4 (57-100)||(17141872-17141915)
chr4 (37-100)||(48077622-48077685)
chr4 (37-100)||(17008277-17008341)
chr4 (37-100)||(17022241-17022305)
chr4 (57-100)||(21531356-21531398)
chr4 (57-100)||(24923291-24923334)
chr4 (50-99)||(26462540-26462589)
[»] scaffold1896 (1 HSPs)
scaffold1896 (53-100)||(437-484)
[»] scaffold1120 (1 HSPs)
scaffold1120 (57-100)||(396-439)
[»] scaffold0206 (1 HSPs)
scaffold0206 (49-99)||(19508-19558)
[»] scaffold0669 (1 HSPs)
scaffold0669 (51-96)||(6035-6080)
[»] scaffold0016 (1 HSPs)
scaffold0016 (57-97)||(24496-24536)
[»] scaffold2141 (1 HSPs)
scaffold2141 (59-98)||(158-197)
[»] scaffold0609 (1 HSPs)
scaffold0609 (57-100)||(2503-2546)
[»] scaffold0027 (1 HSPs)
scaffold0027 (57-100)||(64671-64714)
[»] scaffold0853 (1 HSPs)
scaffold0853 (49-102)||(4263-4316)
[»] scaffold0497 (1 HSPs)
scaffold0497 (37-98)||(11829-11890)


Alignment Details
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 13463816 - 13463899
Alignment:
Q  37 tttgaaacggttgagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgctgttcgtcagagaaga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||    
T  13463816 tttgaaacggttgagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattggtgttcatcggagaaga 13463899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 18750206 - 18750249
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18750206 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 18750249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 179873 - 179827
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccg 95  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  179873 gagttttgaactccggcgcggtggtgccaccaccggccatcgcgccg 179827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 18597089 - 18597139
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  18597089 gagtttcgaactccggcgcggtggtgccaccgccggccaccgcgccggaaa 18597139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 8402110 - 8402158
Alignment:
Q  50 agttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||    
T  8402110 agttttgaactccggtgtggtggtgccaccaccggccaccgcgccggaa 8402158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 3650803 - 3650842
Alignment:
Q  59 ctccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  3650803 ctccggcgcggcggtgccaccaccggccaccgcgccggaa 3650842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 22348304 - 22348261
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcg 92  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||    
T  22348304 gagttttgaactccgacgcagtggtgccaccaccggccaccgcg 22348261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 11949163 - 11949224
Alignment:
Q  37 tttgaaacggttgagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||||| ||||||| ||||| | | |||||||||||| ||||||||||||| |||||    
T  11949163 tttgaaacggtggagttttaaactcagacacggtggtgccactaccggccaccgcgtcggaa 11949224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 35197953 - 35197987
Alignment:
Q  66 gcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||| ||||||||||||||||||    
T  35197953 gcggtggtgccaccacaggccaccgcgccggaaaa 35197987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 36578032 - 36577971
Alignment:
Q  37 tttgaaacggttgagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36578032 tttgaaacggttgagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 36577971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 4838767 - 4838716
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4838767 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 4838716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 26872707 - 26872660
Alignment:
Q  53 tttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26872707 tttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 26872660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 4836501 - 4836550
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4836501 gagttttgaactccggcgcggtggtgccaccaccggccaccacgccggaa 4836550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 4841946 - 4841995
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4841946 gagttttgaactccggcgcggtggtgccaccaccggccaccacgccggaa 4841995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 26875165 - 26875118
Alignment:
Q  53 tttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  26875165 tttgaactccggcgcggtggtgccaccaccggccaccgcgtcggaaaa 26875118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 2750290 - 2750241
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  2750290 gagttttgaactccggcgcggtggttccaccaccggccaccgcgctggaa 2750241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 23091562 - 23091597
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcg 92  Q
    ||||||||||||||||||||||||||||||||||||    
T  23091562 aactccggcgcggtggtgccaccaccggccaccgcg 23091597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 17663683 - 17663632
Alignment:
Q  49 gagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  17663683 gagttttgaaactccggcacggtggtgc-accaccggccaccgcgccggaaaa 17663632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 17682839 - 17682788
Alignment:
Q  49 gagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  17682839 gagttttgaaactccggcacggtggtgc-accaccggccaccgcgccggaaaa 17682788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 8550762 - 8550728
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccg 83  Q
    ||||||||||||||||||||||||| |||||||||    
T  8550762 gagttttgaactccggcgcggtggtaccaccaccg 8550728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 15182089 - 15182044
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgcc 94  Q
    |||||||||  |||| ||||||||||| ||||||||||||||||||    
T  15182089 gagttttgagttccgacgcggtggtgctaccaccggccaccgcgcc 15182044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 39658343 - 39658392
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    |||||||||||||||||||||||||| ||||  ||||| ||| |||||||    
T  39658343 gagttttgaactccggcgcggtggtgacaccggcggccgccgtgccggaa 39658392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 22186070 - 22186135
Alignment:
Q  37 tttgaaacggttgagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22186070 tttgaaacggttgagttttgaactccggcgcggtggtgccaccaccggccaccgcgccagaaaatt 22186135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 25262572 - 25262635
Alignment:
Q  37 tttgaaacggttgagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25262572 tttgaaaagggtgagttttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 25262635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 20622454 - 20622501
Alignment:
Q  53 tttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20622454 tttgaactccggcgcggtggtgccaccaccggccaccgcgctggaaaa 20622501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 21851581 - 21851538
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  21851581 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 21851538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 21860016 - 21859973
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  21860016 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 21859973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 33308237 - 33308186
Alignment:
Q  49 gagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33308237 gagttttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 33308186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 27425339 - 27425289
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  27425339 gagtttcgaactccggcgcggtggtgccaccgccggccaccgcgccggaaa 27425289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 27440385 - 27440335
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  27440385 gagtttcgaactccggcgcggtggtgccaccgccggccaccgcgccggaaa 27440335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 34543088 - 34543046
Alignment:
Q  58 actccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34543088 actccggcgcggtggtgccaccaccggccaccgcgccggaaaa 34543046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 25995588 - 25995531
Alignment:
Q  37 tttgaaacggttgagttttgaactccggcgcggtggtgccaccaccggccaccgcgcc 94  Q
    |||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||    
T  25995588 tttgaaacggctgagttttgagttccgacgcggtggtgccaccaccggccaccgcgcc 25995531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 39756290 - 39756339
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  39756290 gagtttcgaactccggcgcggtggtgccaccgccggccaccgcgccggaa 39756339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 17686421 - 17686378
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  17686421 aactccggcgcggtggtgccaccaccggccatcgcgccggaaaa 17686378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 21322044 - 21322005
Alignment:
Q  59 ctccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21322044 ctccggcgcggtggtgccaccaccggccaccgcgccggaa 21322005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 25193154 - 25193113
Alignment:
Q  52 ttttgaactccggcgcggtggtgccaccaccggccaccgcgc 93  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  25193154 ttttgaactccggcgcggtggtgccaccaccggccactgcgc 25193113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 34529109 - 34529072
Alignment:
Q  63 ggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34529109 ggcgcggtggtgccaccaccggccaccgcgccggaaaa 34529072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 28479936 - 28480004
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgctgttcgtcagagaagatgaag 125  Q
    |||||||||||||||| ||||||||||||||| ||||||||||| |  || ||| | ||||||||||||    
T  28479936 aactccggcgcggtggcgccaccaccggccactgcgccggaaaactattgctcgccggagaagatgaag 28480004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 100
Target Start/End: Original strand, 4281573 - 4281608
Alignment:
Q  65 cgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||| |||||||||||||||||||||||||||||    
T  4281573 cgcggtagtgccaccaccggccaccgcgccggaaaa 4281608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 21150026 - 21150069
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||| ||||||||| || ||||||||||||||    
T  21150026 aactccggcgcggtggcgccaccaccagctaccgcgccggaaaa 21150069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 26718698 - 26718656
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  26718698 aactccggcacggtggtgc-accaccggccaccgcgccggaaaa 26718656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 26732886 - 26732844
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  26732886 aactccggcacggtggtgc-accaccggccaccgcgccggaaaa 26732844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 44373732 - 44373782
Alignment:
Q  49 gagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  44373732 gagttttgaaactccggcacggtggtgc-accaccggccaccgcgccggaaa 44373782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 44389643 - 44389693
Alignment:
Q  49 gagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  44389643 gagttttgaaactccggcacggtggtgc-accaccggccaccgcgccggaaa 44389693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 11626033 - 11625983
Alignment:
Q  50 agttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||| |||||||||||||| ||||||||| ||| || |||||||||||||    
T  11626033 agtttcgaactccggcgcggaggtgccaccgccgtcctccgcgccggaaaa 11625983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 35038870 - 35038910
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  35038870 aactccggcacggtggtgc-accaccggccaccgcgccggaa 35038910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 27605581 - 27605541
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccgga 97  Q
    ||||||| ||||||||||||||| |||||||||| ||||||    
T  27605581 aactccgacgcggtggtgccacctccggccaccgtgccgga 27605541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 23568453 - 23568516
Alignment:
Q  37 tttgaaacggttgagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23568453 tttgaaacggttgagttttgaactccggcgcggtgatgccaccaccggccaccgcgccggaaaa 23568516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 31549576 - 31549531
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31549576 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 31549531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 31411810 - 31411857
Alignment:
Q  53 tttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  31411810 tttgaactccggtgcggtggtgccaccaccggccaccgcgccggaaaa 31411857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 31422718 - 31422765
Alignment:
Q  53 tttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31422718 tttgaactccggcgcagtggtgccaccaccggccaccgcgccggaaaa 31422765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 29189248 - 29189294
Alignment:
Q  51 gttttgaactccggcgcggtggtgccaccaccggccaccgcgccgga 97  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  29189248 gttttgaactcaggcgcggtggtgccaccaccggccaccgcgccgga 29189294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 2826866 - 2826915
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  2826866 gagttttgaactccggcgcggtggtgccaccaccggccactgcgtcggaa 2826915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 29185309 - 29185268
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  29185309 aactccggcacggtggtgccaccaccggccaccgcgccggaa 29185268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 8949174 - 8949134
Alignment:
Q  60 tccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||| |||||||||||||||||||||||||||| |||||||    
T  8949174 tccgacgcggtggtgccaccaccggccaccgcgtcggaaaa 8949134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 41669291 - 41669341
Alignment:
Q  50 agttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||||||| || |||||| ||| || |||||||||||||    
T  41669291 agttttgaactccggcgcggaggcgccaccgccgtccgccgcgccggaaaa 41669341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 41684098 - 41684148
Alignment:
Q  50 agttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||||||| || |||||| ||| || |||||||||||||    
T  41684098 agttttgaactccggcgcggaggcgccaccgccgtccgccgcgccggaaaa 41684148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 20371948 - 20371908
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  20371948 aactccggcacggtggtgc-accaccggccaccgcgccggaa 20371908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 20397672 - 20397632
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  20397672 aactccggcacggtggtgc-accaccggccaccgcgccggaa 20397632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 24611528 - 24611577
Alignment:
Q  50 agttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||||| |||||||||||||| |||||| ||| || ||||||||||||    
T  24611528 agttttgagctccggcgcggtggcgccaccgccgtccgccgcgccggaaa 24611577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 24693968 - 24693919
Alignment:
Q  50 agttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||||| |||||||||||||| |||||| ||| || ||||||||||||    
T  24693968 agttttgagctccggcgcggtggcgccaccgccgtccgccgcgccggaaa 24693919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 16668551 - 16668615
Alignment:
Q  37 tttgaaacggttgagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaat 101  Q
    ||||||||||  |||||||||  |||| |  |||||||||||||| | |||||||||||||||||    
T  16668551 tttgaaacggcggagttttgagttccgacatggtggtgccaccacagaccaccgcgccggaaaat 16668615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 27967450 - 27967366
Alignment:
Q  37 tttgaaacggttgagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaaattgctgttcgtcagagaaga 120  Q
    ||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || | |||||||    
T  27967450 tttgaaaagggtgagttttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgtccgccggagaaga 27967366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 27976903 - 27976819
Alignment:
Q  37 tttgaaacggttgagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaaattgctgttcgtcagagaaga 120  Q
    ||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || | |||||||    
T  27976903 tttgaaaagggtgagttttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgtccgccggagaaga 27976819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 15974736 - 15974785
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15974736 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 15974785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 5200655 - 5200600
Alignment:
Q  45 ggttgagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5200655 ggttgagttttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 5200600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 5209784 - 5209729
Alignment:
Q  45 ggttgagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5209784 ggttgagttttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 5209729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 17515833 - 17515790
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17515833 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 17515790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 17537381 - 17537424
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17537381 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 17537424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 38411786 - 38411829
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  38411786 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 38411829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 4185176 - 4185226
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  4185176 gagtttcgaactccggcgcggtggtgccaccgccggccaccgcgccggaaa 4185226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 559926 - 559883
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  559926 aactccggcgcggtggtgccaccaccggccaccgcgctggaaaa 559883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 569835 - 569792
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  569835 aactccggcgcggtggtgccaccaccggccaccgcgctggaaaa 569792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 48305493 - 48305444
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    |||||||||||||||||||||||||||||||  ||||| ||| |||||||    
T  48305493 gagttttgaactccggcgcggtggtgccaccgacggccgccgtgccggaa 48305444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 16474460 - 16474424
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgc 93  Q
    |||||||||||||||||||||||| ||||||||||||    
T  16474460 aactccggcgcggtggtgccaccatcggccaccgcgc 16474424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 16911225 - 16911193
Alignment:
Q  68 ggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||||||||||||||||||||    
T  16911225 ggtggtgccaccaccggccaccgcgccggaaaa 16911193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 1887981 - 1887939
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  1887981 aactccggcacggtggtgc-accaccggccaccgcgccggaaaa 1887939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 1902082 - 1902040
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  1902082 aactccggcacggtggtgc-accaccggccaccgcgccggaaaa 1902040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 24187180 - 24187138
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  24187180 aactccggcacggtggtgc-accaccggccaccgcgccggaaaa 24187138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 28396977 - 28396930
Alignment:
Q  51 gttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    |||||||||||||||||||||||||||||  ||||| ||| |||||||    
T  28396977 gttttgaactccggcgcggtggtgccaccggcggccgccgtgccggaa 28396930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 32090907 - 32090844
Alignment:
Q  37 tttgaaacggttgagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||  |||||||||  |||| | |||||||||||||||| |||||||||||| ||||    
T  32090907 tttgaaacggcggagttttgagttccgacacggtggtgccaccaccagccaccgcgccgaaaaa 32090844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 16544220 - 16544258
Alignment:
Q  60 tccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  16544220 tccggtgcggtggtgccaccaccggccaccgcgctggaa 16544258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 16621442 - 16621404
Alignment:
Q  60 tccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  16621442 tccggtgcggtggtgccaccaccggccaccgcgctggaa 16621404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 13737346 - 13737297
Alignment:
Q  50 agttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||||| |||||||||||||| |||||| ||| || ||||||||||||    
T  13737346 agttttgagctccggcgcggtggcgccaccgccgtccgccgcgccggaaa 13737297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 1005811 - 1005727
Alignment:
Q  37 tttgaaacggttgagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaaattgctgttcgtcagagaaga 120  Q
    ||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || | |||||||    
T  1005811 tttgaaaagggtgagttttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgtccgccggagaaga 1005727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 52987451 - 52987499
Alignment:
Q  50 agttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52987451 agttttgaactccggcgcggtggtgccaccaccgaccaccgcgccggaa 52987499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 4444347 - 4444398
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  4444347 gagttttgaactccggcgtggtggtgccaccgccggccaccgcgccggaaaa 4444398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 16289553 - 16289621
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgctgttcgtcagagaagatgaag 125  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |  || ||| | ||||||||||||    
T  16289553 aactccggcgcggtggcgccaccaccggccaccgcgccggaaaactattgctcgccggagaagatgaag 16289621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 31852371 - 31852325
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccg 95  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||    
T  31852371 gagttttgaactccagcgcagtggtgccaccaccggccaccgcgccg 31852325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 50754269 - 50754220
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    |||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  50754269 gagttttgaactccggtgcggtggtgtcaccaccggccactgcgccggaa 50754220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 4504970 - 4504930
Alignment:
Q  60 tccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  4504970 tccggcgtggtggtgccaccaccggccaccgcgccggaaaa 4504930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 1775840 - 1775883
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||| || |||||||||||||||||||||||||||    
T  1775840 aactccggcgcggcggcgccaccaccggccaccgcgccggaaaa 1775883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 4887693 - 4887736
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||| || |||||||||||||||||||||||||||    
T  4887693 aactccggcgcggcggcgccaccaccggccaccgcgccggaaaa 4887736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 5517810 - 5517767
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||| || |||||||||||||||||||||||||||    
T  5517810 aactccggcgcggcggcgccaccaccggccaccgcgccggaaaa 5517767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 11262326 - 11262287
Alignment:
Q  61 ccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  11262326 ccggcgcggtggcgccaccaccggccaccgcgccggaaaa 11262287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 2216604 - 2216562
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  2216604 aactccggcgcggtggcgccaccaccggccaccgcaccggaaa 2216562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 13603425 - 13603387
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccg 95  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  13603425 aactccggcgcggtggtgccaccatcggccaccgcgccg 13603387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 18954664 - 18954624
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  18954664 aactccggcgcggtggtgc-accaccggccaccgcgccggaa 18954624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 20053181 - 20053222
Alignment:
Q  59 ctccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  20053181 ctccggcgcggcggcgccaccaccggccaccgcgccggaaaa 20053222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 20075841 - 20075882
Alignment:
Q  59 ctccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  20075841 ctccggcgcggcggcgccaccaccggccaccgcgccggaaaa 20075882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 27551930 - 27551888
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  27551930 aactccggcacggtggtgc-accaccggccaccgcgccggaaaa 27551888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 28469303 - 28469261
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  28469303 aactccggcacggtggtgc-accaccggccaccgcgccggaaaa 28469261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 9184948 - 9184899
Alignment:
Q  49 gagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||||||||||    
T  9184948 gagttttgaaactccggcacggtggtgc-accaccggccaccgcgccggaa 9184899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 23755578 - 23755544
Alignment:
Q  66 gcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||| ||||||||||||||||||||||||||    
T  23755578 gcggtggtaccaccaccggccaccgcgccggaaaa 23755544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 30997013 - 30996949
Alignment:
Q  37 tttgaaacggttgagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30997013 tttgaaaagggtgagttttgaaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 30996949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 27048718 - 27048655
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgctgttcgtcagagaaga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| || | |||||||    
T  27048718 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgtccgccggagaaga 27048655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 27058962 - 27058899
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgctgttcgtcagagaaga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| || | |||||||    
T  27058962 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaattgttgtccgccggagaaga 27058899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 20216018 - 20216071
Alignment:
Q  50 agttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattg 103  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  20216018 agttttgagctccggcgcggtggtgccaccgccggccaccgcgccggaaaattg 20216071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 22110039 - 22110092
Alignment:
Q  50 agttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaattg 103  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  22110039 agttttgagctccggcgcggtggtgccaccgccggccaccgcgccggaaaattg 22110092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 24296480 - 24296429
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  24296480 gagttttgaactccggcgtggtggtgccaccgccggccaccgcgccggaaaa 24296429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 24310511 - 24310460
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  24310511 gagttttgaactccggcgtggtggtgccaccgccggccaccgcgccggaaaa 24310460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 5995689 - 5995735
Alignment:
Q  54 ttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  5995689 ttgaactccggcgcggtggtgccaccaccggccaccgtgccggaaaa 5995735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 24919169 - 24919222
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 102  Q
    |||||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  24919169 gagtttcgaactccggcgcggtggtgccactgccggccaccgcgccggaaaatt 24919222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 5488208 - 5488164
Alignment:
Q  58 actccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 102  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  5488208 actccggcgcggtggtgccaccaccggccaccgtgccggaaaatt 5488164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 3042401 - 3042444
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  3042401 aactccggcgcggtggcgccaccaccggccaccgcgccggaaaa 3042444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 877468 - 877419
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||||||||| |||||||||||||||| |||||||| ||||||||    
T  877468 gagttttgaactccgacgcggtggtgccaccatcggccaccacgccggaa 877419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 15390724 - 15390679
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 102  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||    
T  15390724 aactccggcgcggtggtgccaacaccggccaccgcgccgggaaatt 15390679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 16587809 - 16587854
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 102  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||    
T  16587809 aactccggcgcggtggcgccaccaccggcaaccgcgccggaaaatt 16587854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 16607571 - 16607526
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 102  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||    
T  16607571 aactccggcgcggtggcgccaccaccggcaaccgcgccggaaaatt 16607526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 1141767 - 1141806
Alignment:
Q  59 ctccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  1141767 ctccggcgcggcggtgccaccaccggccaccgcgccggaa 1141806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 17092519 - 17092468
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||||| ||||| |||||| ||||||| ||||||||||||    
T  17092519 gagttttgaactccggcgtggtggcgccaccgccggccatcgcgccggaaaa 17092468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 13289833 - 13289784
Alignment:
Q  50 agttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||||| |||||||||||||| |||||||||| || ||||||||||||    
T  13289833 agttttgagctccggcgcggtggcgccaccaccgtccgccgcgccggaaa 13289784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 13304800 - 13304751
Alignment:
Q  50 agttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||||| |||||||||||||| |||||||||| || ||||||||||||    
T  13304800 agttttgagctccggcgcggtggcgccaccaccgtccgccgcgccggaaa 13304751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 24737490 - 24737523
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccacc 82  Q
    ||||||||||||||||||||||||||||||||||    
T  24737490 gagttttgaactccggcgcggtggtgccaccacc 24737523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 19827625 - 19827583
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  19827625 aactccggcacggtggtgc-accaccggccaccgcgccggaaaa 19827583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 33346171 - 33346220
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    |||||||||||||  ||||||||||||||| | |||||||| ||||||||    
T  33346171 gagttttgaactctagcgcggtggtgccactatcggccaccacgccggaa 33346220  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 12997531 - 12997578
Alignment:
Q  53 tttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12997531 tttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 12997578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 52296730 - 52296783
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 102  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  52296730 gagttttgaactccggcgcagtggtgccaccaccggccaccgcgtcggaaaatt 52296783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 4749089 - 4749045
Alignment:
Q  56 gaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4749089 gaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 4749045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 638117 - 638076
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccg 90  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  638117 gagttttgaactccggcgcggtggtgccaccaccggccaccg 638076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 32215923 - 32215972
Alignment:
Q  51 gttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  32215923 gtttcgaactccggcgcggtggtgccaccaccggccaccgcgctggaaaa 32215972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 772287 - 772331
Alignment:
Q  58 actccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 102  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  772287 actccggcgcggaggtgccaccaccggccaccgcgccggaaaatt 772331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 20866883 - 20866839
Alignment:
Q  58 actccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  20866883 actctggcgcggtggtgccaccaccggccaccgcgccggaaaatt 20866839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 26447212 - 26447261
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| ||||    
T  26447212 gagttttgaactccggcacggtggtgccaccatcggccaccgcgctggaa 26447261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 5405337 - 5405294
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||| || |||||||||||||||||||||||||||    
T  5405337 aactccggcgcggcggcgccaccaccggccaccgcgccggaaaa 5405294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 17141872 - 17141915
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||| |||||||||||| ||||||||||||||    
T  17141872 aactccggcgcggtggcgccaccaccggctaccgcgccggaaaa 17141915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 48077622 - 48077685
Alignment:
Q  37 tttgaaacggttgagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||  |||||| ||  |||| || |||||||||||||||||||||||||||||||||    
T  48077622 tttgaaacggcggagtttcgagttccgacgaggtggtgccaccaccggccaccgcgccggaaaa 48077685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 17008277 - 17008341
Alignment:
Q  37 tttgaaacggttgagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||  ||||||| || ||||||||||| |  |||||||||||||||||||||||||||    
T  17008277 tttgaaacggaggagttttaaaactccggcgcggcgacgccaccaccggccaccgcgccggaaaa 17008341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 17022241 - 17022305
Alignment:
Q  37 tttgaaacggttgagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||  ||||||| || ||||||||||| |  |||||||||||||||||||||||||||    
T  17022241 tttgaaacggaggagttttaaaactccggcgcggcgacgccaccaccggccaccgcgccggaaaa 17022305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 21531398 - 21531356
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  21531398 aactccggcacggtggtgc-accaccggccaccgcgccggaaaa 21531356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 24923291 - 24923334
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||  |||||||||||||| |||||||||||    
T  24923291 aactccggcgcggtggcaccaccaccggccactgcgccggaaaa 24923334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 26462589 - 26462540
Alignment:
Q  50 agttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||||| |||||||||||||| |||||| ||| || ||||||||||||    
T  26462589 agttttgagctccggcgcggtggcgccaccgccgtccgccgcgccggaaa 26462540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1896 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1896
Description:

Target: scaffold1896; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 437 - 484
Alignment:
Q  53 tttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  437 tttgaactccggcgcggtggtgccactaccggccaccgcgccggaaaa 484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1120 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1120
Description:

Target: scaffold1120; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 396 - 439
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  396 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 19508 - 19558
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaa 99  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  19508 gagtttagaactccggcgcggtggtgccaccgccggccaccgcgccggaaa 19558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 6080 - 6035
Alignment:
Q  51 gttttgaactccggcgcggtggtgccaccaccggccaccgcgccgg 96  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||    
T  6080 gtttcgaactccggcacggtggtgccaccaccggccaccgcgccgg 6035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 24496 - 24536
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccgga 97  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  24496 aactccggtgcggtggtgccaccaccggccaccgcgccgga 24536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2141 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold2141
Description:

Target: scaffold2141; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 158 - 197
Alignment:
Q  59 ctccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  158 ctccggcgcggcggtgccaccaccggccaccgcgccggaa 197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 2546 - 2503
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||| |||||||||||| ||||||||||||||    
T  2546 aactccggcgcggtggcgccaccaccggctaccgcgccggaaaa 2503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 64714 - 64671
Alignment:
Q  57 aactccggcgcggtggtgccaccaccggccaccgcgccggaaaa 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||    
T  64714 aactccggcgcggtggtgccaccaacgaccaccgcgccggaaaa 64671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 4263 - 4316
Alignment:
Q  49 gagttttgaactccggcgcggtggtgccaccaccggccaccgcgccggaaaatt 102  Q
    |||||| ||||||||||||||||||||| || |||| |||||||| ||||||||    
T  4263 gagtttcgaactccggcgcggtggtgccgccgccggtcaccgcgctggaaaatt 4316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 11829 - 11890
Alignment:
Q  37 tttgaaacggttgagttttgaa-ctccggcgcggtggtgccaccaccggccaccgcgccggaa 98  Q
    ||||||||||  |||||||||| ||||||| ||||||||| |||||||||||||| |||||||    
T  11829 tttgaaacggcggagttttgaaactccggcacggtggtgc-accaccggccaccgtgccggaa 11890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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