View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11126_high_25 (Length: 210)
Name: NF11126_high_25
Description: NF11126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11126_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 2564415 - 2564241
Alignment:
| Q |
17 |
caatcaacctaagaacaaattcaannnnnnnncgtccaatagaagatataagtttgtgtgtttgtttgatactaagttcctatcatgtcagtatcatatc |
116 |
Q |
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| T |
2564415 |
caatcaacctaagaacaaattcaattttttttcgtccaatggaagatataagtgtgtgtgtttgtttgatact-----cctatcatgtcagtatcacatc |
2564321 |
T |
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| Q |
117 |
gtatccttattcaacttcttattctatttcatatctatcttatcatgcacacccaacaaccttaaatttttatctctctg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2564320 |
gtatccttattcaacttcttattctatttcatatctatcttatcatgcacacccaacaaccttaaatttttatcactctg |
2564241 |
T |
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