View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11126_high_7 (Length: 451)
Name: NF11126_high_7
Description: NF11126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11126_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 41764131 - 41763972
Alignment:
| Q |
1 |
cagcttcgactctgtctaagttgctgagctttcctgccaggtttggtttctgctaaaaaccataaga-tttagattcatagaagttgtgttgggtcaaaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41764131 |
cagcttcgactctgtctaagttgctgagctttcctgccaggtttggtttctgctgaaaaccataagattttagattcatagaagttgtgttgggtcaaaa |
41764032 |
T |
|
| Q |
100 |
gtatatttaaatgtctcaaatactcatgttaaannnnnnngacttggatcattttttatt |
159 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
41764031 |
gtatatttaaatgtctcaaatattcatgttaaatttttttgacttggatcattttttatt |
41763972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 22488596 - 22488522
Alignment:
| Q |
159 |
tgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatg |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22488596 |
tgaaaaatgcttgatagcacgacagaataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatg |
22488522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 382 - 451
Target Start/End: Complemental strand, 41763954 - 41763885
Alignment:
| Q |
382 |
acacataaactataaattcatcatttacatcaataaagcaacagaaattaacgcagcctgtcttgttttt |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
41763954 |
acacataaactataaattcatcatttacatcaataaagcaacagaaattaatgcaacctgtcttgttttt |
41763885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 22488480 - 22488413
Alignment:
| Q |
275 |
gccttccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagtcatgttgtatagcacttctc |
342 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22488480 |
gccttccgcatgatttgtgtgttgtgtattgtcgtggggataaagagtcgtgttgtatagcacttctc |
22488413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 8558103 - 8558030
Alignment:
| Q |
160 |
gaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatg |
233 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8558103 |
gaaaaatgcttgatagcacgacagaataacatgcatgaatgcacacgacatatttcaaaccatttgatgaaatg |
8558030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 8557988 - 8557921
Alignment:
| Q |
275 |
gccttccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagtcatgttgtatagcacttctc |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8557988 |
gccttccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagtcgtgttgtatagcacttctc |
8557921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 13798515 - 13798461
Alignment:
| Q |
153 |
ttttattgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
13798515 |
ttttattgaaaaatgcttgatagcacgacatattaacaagcacgaaggcacacga |
13798461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 33508239 - 33508196
Alignment:
| Q |
279 |
tccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagt |
322 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || |||||||| |
|
|
| T |
33508239 |
tccgcatgatttgtgtgtggtgtattgtcgtgagggtaaagagt |
33508196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 33508361 - 33508290
Alignment:
| Q |
159 |
tgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacgacatatttcaaaccatttgatgaa |
230 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||| ||||||||||||| | || || ||||||||| |
|
|
| T |
33508361 |
tgaaaaatgcttgatagcacgacatagtgacaagcacgaaggcacacgacatatcttaagccgtttgatgaa |
33508290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 11210326 - 11210277
Alignment:
| Q |
158 |
ttgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacga |
207 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
11210326 |
ttgaaaaatgcttgatagcacgacatactaacaagcacgaaggcacacga |
11210277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 31367739 - 31367683
Alignment:
| Q |
149 |
cattttttattgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacac |
205 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
31367739 |
catttttttatgaaaaatgcttgatagcacgacatactaacaagcacgaaggcacac |
31367683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University